View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_high_3 (Length: 616)
Name: NF19176_high_3
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 214 - 598
Target Start/End: Original strand, 40290145 - 40290525
Alignment:
| Q |
214 |
ttaaacaacacacatatagaaacattgtgagcacttaccacatgagatacaaaattatctcttaattaatgtagcttatgatgttcaatat--acagaac |
311 |
Q |
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| T |
40290145 |
ttaaacaacacacatatagaaacattgtgagcacttaccacatgagataca---ttatctcttaatt---gtagcttatgatgttcaatatgtacagaac |
40290238 |
T |
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| Q |
312 |
ataattcataagtggtatgatctcttcgtaatggtaagcagtttagacatgggtcgtactatctcatccttacggcagacagtttctacatgaattgtaa |
411 |
Q |
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| T |
40290239 |
ataattcataagtggtatgatctcttcgtaatggtaaacagtttagacatgggtcgtactatcttatccttacggcagacagtttctacatgaattgtaa |
40290338 |
T |
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| Q |
412 |
tatctctttgttgcatcaaacgaaacacctatagaaattctatattcgctttccacatgagatgcattatctcttcgttgcagtgtaagatgtttgttca |
511 |
Q |
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| T |
40290339 |
tatctctttgttgcatcaaacaaaacacctatagaaattctatattcgctttccgcataagatacattatctcttcgttgcagtgtaagatgtttgttca |
40290438 |
T |
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| Q |
512 |
tagaatacattttcttctcaacttttcataattccgatcaatgtcgtgagaatttgatctcgtgcaacactttctcaaaataatcat |
598 |
Q |
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| T |
40290439 |
tagaatacattttcttctcaacttttcataattccgatcaatgtcgtgtgaatttgatctcgtgcaacactttctcaaaataatcat |
40290525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 590
Target Start/End: Original strand, 40283034 - 40283100
Alignment:
| Q |
524 |
tcttctcaacttttcataattccgatcaatgtcgtgagaatttgatctcgtgcaacactttctcaaa |
590 |
Q |
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| T |
40283034 |
tcttatcaacttttcataattctaatcaatgtcatgagaatttgttctcatgcaacagttgctcaaa |
40283100 |
T |
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