View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_high_34 (Length: 227)
Name: NF19176_high_34
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_high_34 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 44 - 227
Target Start/End: Original strand, 6234987 - 6235182
Alignment:
| Q |
44 |
ttacgttgtattgttatgcggagaatcataaacacacttagtaatgtaaactgatgtaagagtgtcaatgaagataaaaacttaactagaaagcacacat |
143 |
Q |
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| T |
6234987 |
ttacgttgtattgttatgcggagaatcataaacacacttagtaatgtaaactgatgtaagagtgtcaatgaagataaaaacttaactagaaagcacacat |
6235086 |
T |
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| Q |
144 |
gatatagaaaattatcatttt------------acaacaatccattattaaaccaaattaaaatcataacaatacaactatgtagtcaaacaaaca |
227 |
Q |
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| T |
6235087 |
gatatagaaaattatcattttacagaaatcacaacaacaatccattattaaaccaaattaaaatcataacaatacaactatgtagtcaaacaaaca |
6235182 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 5283105 - 5283010
Alignment:
| Q |
48 |
gttgtattgttatgcggagaatcataaacacacttagtaatgtaaactgatgtaagagtgtcaatgaagataaaaacttaactagaaagcacacatga |
145 |
Q |
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| T |
5283105 |
gttgtattgttatgcagagaatcataaagac--ttagtaatgtaaactgatataatagtgtcaatgaagataaaaacataactagaaagcacccatga |
5283010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 5282947 - 5282885
Alignment:
| Q |
165 |
acaacaatccattattaaaccaaattaaaatcataacaatacaactatgtagtcaaacaaaca |
227 |
Q |
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| T |
5282947 |
acaacaatccattattcaacaaaattaaaatcataacaaaacaactatgtagtcaaacaaaca |
5282885 |
T |
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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 5278146 - 5278206
Alignment:
| Q |
161 |
ttttacaacaatccattattaaaccaaattaaaatcataacaatacaactatgtagtcaaa |
221 |
Q |
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| T |
5278146 |
ttttacaacaatctattatcaaaccaaattcaactgaaaacaaaacaactatatagtcaaa |
5278206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 5286158 - 5286213
Alignment:
| Q |
165 |
acaacaatccattattaaaccaaattaaaatcataacaatacaactatgtagtcaaa |
221 |
Q |
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| T |
5286158 |
acaacaatcc-ttattaaaccaaattaaacccaaaacaaaacaactatgtattcaaa |
5286213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 20354519 - 20354424
Alignment:
| Q |
48 |
gttgtattgttatgcggagaatcataaacacacttagtaatgtaaactgatgtaagagtgtcaatgaagataaaaacttaactagaaagcacacatga |
145 |
Q |
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| T |
20354519 |
gttgtattgttatgcagtgaatcataaagac--ttagtaatgtaaactgatataatagtgtcaatgaagataaaaacataactagaaagcacccatga |
20354424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 20354335 - 20354273
Alignment:
| Q |
165 |
acaacaatccattattaaaccaaattaaaatcataacaatacaactatgtagtcaaacaaaca |
227 |
Q |
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| T |
20354335 |
acaacaatccattattaaaccaaattaaattcataacaaaacaactatgaagtcaaacaaaca |
20354273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 20357544 - 20357599
Alignment:
| Q |
165 |
acaacaatccattattaaaccaaattaaaatcataacaatacaactatgtagtcaaa |
221 |
Q |
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| T |
20357544 |
acaacaatcc-ttattaaaccaaattaaactcaaaacaaaacaactatgtattcaaa |
20357599 |
T |
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