View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_high_5 (Length: 498)
Name: NF19176_high_5
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 4611498 - 4611984
Alignment:
| Q |
8 |
aaaaaaccagaatcatttctgttaaatgtgatgaatctgttataccttttctaataattgagttgaatgatataaaattatattttgaatatgtag---- |
103 |
Q |
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| T |
4611498 |
aaaaaaccagaatcatttctgttaaatgtgatgaatctgttataccttttctaataattgagttgaatgatataaaattatattttgaatatgtagagta |
4611597 |
T |
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| Q |
104 |
-agtgcagctgcagcatatatatattttggatggataagtcttgatgatatcagatagtgtttcgttgtgtagcttgcatgagctcaagaataaaactta |
202 |
Q |
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| T |
4611598 |
gagtgcagctgcagcatatatatattttggatggataagtcttgatgatatcagatagtgtttcgttgtgcggcttgcatgagctcaagaataaaactta |
4611697 |
T |
|
| Q |
203 |
tggtggaggtccacaatcatatatttattgatttagtggaccttgcactaatatttgtccaattaaattaaatagtctttataatcgtggaaaggttatc |
302 |
Q |
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| T |
4611698 |
tggtggaggtccacaatcatatatttattgatttagt-gaccttgcactaatatttgtccaattaaattaaatagtctttataatcgtggaaaggttatc |
4611796 |
T |
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| Q |
303 |
gaa--ctgccattgcatgcaaaattttagtttaagaaggga---------tctgctgtaactgctttacgcatagtagatctcgaccataaaaaagtgat |
391 |
Q |
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| T |
4611797 |
gaaagctgcca-tgcatgcaaaattttagtttaagaagggatctggatcttctgctgtaactgctttatgcagtatagatctcgaccataaaaaagtgat |
4611895 |
T |
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| Q |
392 |
tcattggttcagatttgtttgaccaattttcacacagtttaatcttaaccatttgtttttaatcacacaaatcaattctcaccaccaca |
480 |
Q |
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| T |
4611896 |
tcattggttcagttttatttgataaattttcacacagtttaattttaaccattcgtttttaatcggacaaatcaattctcacccccaca |
4611984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 4515512 - 4515344
Alignment:
| Q |
54 |
ttttctaataattgagttgaatgatataaaattatattttgaatatgtagagtgcagctgcagcatatatatattttggatggataagtcttgatgatat |
153 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| | || |
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| T |
4515512 |
ttttctattaatcgagttgaatgatataaaattatattttgaatatgtagagtgaagctgcagcatatatatattttggatgaatgagtcttgataacat |
4515413 |
T |
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| Q |
154 |
cagatagtgtttcgttgtgtagcttgcatgagctcaagaataaaacttatggtggaggtccacaatcatat |
224 |
Q |
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| T |
4515412 |
cagacactgtttc--tgtgtagcttgcataagcttaggaacaaaacttatggtggtggtccacaatcatat |
4515344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 425
Target Start/End: Complemental strand, 6364721 - 6364693
Alignment:
| Q |
397 |
ggttcagatttgtttgaccaattttcaca |
425 |
Q |
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| T |
6364721 |
ggttcagatttgtttgaccaattttcaca |
6364693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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