View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19176_high_8 (Length: 451)

Name: NF19176_high_8
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19176_high_8
NF19176_high_8
[»] chr2 (6 HSPs)
chr2 (17-442)||(34325108-34325534)
chr2 (26-442)||(29352283-29352717)
chr2 (229-364)||(44918414-44918546)
chr2 (224-280)||(44912530-44912586)
chr2 (219-280)||(44937806-44937867)
chr2 (316-364)||(27589270-27589318)
[»] chr8 (3 HSPs)
chr8 (26-442)||(4027693-4028127)
chr8 (230-294)||(27183901-27183965)
chr8 (229-280)||(12724906-12724957)
[»] chr7 (5 HSPs)
chr7 (170-441)||(30249757-30250031)
chr7 (170-375)||(25628144-25628349)
chr7 (28-138)||(30249588-30249701)
chr7 (231-277)||(5442389-5442435)
chr7 (231-277)||(5451399-5451445)
[»] chr5 (4 HSPs)
chr5 (170-375)||(30651519-30651724)
chr5 (170-295)||(31777865-31777990)
chr5 (317-375)||(31778012-31778070)
chr5 (219-287)||(42637352-42637420)
[»] chr6 (2 HSPs)
chr6 (173-292)||(32744859-32744978)
chr6 (238-280)||(1146409-1146451)
[»] chr4 (2 HSPs)
chr4 (219-292)||(48741982-48742055)
chr4 (246-282)||(1327288-1327324)
[»] scaffold0129 (1 HSPs)
scaffold0129 (218-295)||(33545-33622)
[»] chr3 (1 HSPs)
chr3 (211-284)||(44550488-44550561)


Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Original strand, 34325108 - 34325534
Alignment:
Q  17 aaacaaccgtatattatacacgaatgatggaatttgtcattggttgagtaatgatgatcaacttttgttggtatcgtttgacctcagcagctatgtgtat 116  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34325108 aaacaaacatatattatacacgaatgatggaatttgtcattggttgagtaatgatgatcaacttttgttggtatcgtttgacctcagcagctatgtgtat 34325207  T
Q  117 tttacaacaagcaagcccataacaatacccacaagaggtatggcggcaaaatcggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34325208 tttacaacaagcaagcccataacaatacccacaagaggtatggcggcaaaatcggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaa 34325307  T
Q  217 cgactacctttgacatatcgattttaggtgaacttggtg-tgagtgaatcatggactaaactcttcactattggaccttttcccttctatattgagagac 315  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  34325308 cgactacctttgacatatcgattttaggtgaacttggtgttgagtgaatcatggactaagctcttcactattggaccttttcccttctacattgagagac 34325407  T
Q  316 ttattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtct 415  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34325408 ttattggagcaaggaggaatggtgatatatttttcgaaaaaaaagatgaaaaaatagtctgctatgatttaagtacacacatggttgaggaactcggtct 34325507  T
Q  416 tgaagaagcaccatcaaatagaataat 442  Q
    |||||||||||||||||||||||||||    
T  34325508 tgaagaagcaccatcaaatagaataat 34325534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 26 - 442
Target Start/End: Complemental strand, 29352717 - 29352283
Alignment:
Q  26 tatattatacacgaatgatggaatttgtcattggttgagtaa---tgatgatcaacttttgttggtatcgtttgacctcagcagctatgtgtattttaca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||   | |||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  29352717 tatattatacacgaatgatggaatttgtcattggttgagtaaaaataatgatcaactttggttggtatcgtttgaccttagcagctatgtgtattttaca 29352618  T
Q  123 acaagcaagcccata---acaata---cccacaa--ga----ggtatggcggcaaaatcggtggtgttaaatgggtccatcgctttgatctcttggtatc 210  Q
    || | || |||||||   |||| |   ||||     ||    ||||||| ||||  || |||| |||||||||||||||||||||||||||||||||||     
T  29352617 acgaacacgcccatacccacaacagatcccagttttgattatggtatggtggcacgattggtgatgttaaatgggtccatcgctttgatctcttggtatg 29352518  T
Q  211 caaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctatattga 310  Q
     |   | |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |    
T  29352517 taggcaagactacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgccctcctatattca 29352418  T
Q  311 gagacttattggagcagggaggaatggtgatatatt-tttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttg---agga 406  Q
    |  || |||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||    
T  29352417 ggaacctattggagtagggaggaatggtgatatattctttcaaaaaa-aagataaaaaaatagtctgctatgatttaagtacacgcatggttgaggagga 29352319  T
Q  407 actcggtcttgaagaagcaccatcaaatagaataat 442  Q
    ||| ||||||||||||||||||||||||||||||||    
T  29352318 acttggtcttgaagaagcaccatcaaatagaataat 29352283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 364
Target Start/End: Complemental strand, 44918546 - 44918414
Alignment:
Q  229 acatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagg 328  Q
    ||||||| ||||||||||||||||||| ||  ||||| ||||||||||||||   | |||||||  | ||   ||||||| || |  |||| ||||||||    
T  44918546 acatatcaattttaggtgaacttggtgggaaagaatcgtggactaaactctttgttgttggaccactgcc---ctatattaagtgttttatcggagcagg 44918450  T
Q  329 gaggaatggtgatatatttttcaaaaaagaagatga 364  Q
    ||  |||||||||||||||||| ||||| |||||||    
T  44918449 gaaaaatggtgatatatttttccaaaaaaaagatga 44918414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 44912586 - 44912530
Alignment:
Q  224 ctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactctt 280  Q
    |||| ||||||||||||| ||||||||||||||||  ||||| || |||||||||||    
T  44912586 ctttcacatatcgattttgggtgaacttggtgtgaaggaatcgtgaactaaactctt 44912530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 44937867 - 44937806
Alignment:
Q  219 actacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactctt 280  Q
    ||||| ||| ||||||| ||||| |||||||| || ||||  ||||||||||||||||||||    
T  44937867 actacttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctt 44937806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 27589318 - 27589270
Alignment:
Q  316 ttattggagcagggaggaatggtgatatatttttcaaaaaagaagatga 364  Q
    ||||||||||||||  ||| |||||||||||||| |||||||| |||||    
T  27589318 ttattggagcaggggagaagggtgatatattttttaaaaaagatgatga 27589270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 26 - 442
Target Start/End: Original strand, 4027693 - 4028127
Alignment:
Q  26 tatattatacacgaatgatggaatttgtcattggttgagtaatgatgatcaacttttgttggtatcgtttgacctcagcagctatgtgtattttacaaca 125  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  4027693 tatattatacacgaatgatggaatttgtcattggttaaataatgatgatcgactttggttagtatcgtttgacctcagcagctatgtgtattttacaaca 4027792  T
Q  126 agcaagcccataacaatacccacaagag------------------gtatggcggcaaaatcggtggtgttaaatgggtccatcgctttgatctcttggt 207  Q
    |||| |||||||||||||||||||||||                  ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  4027793 agcacgcccataacaatacccacaagagatgccaattttaaatatggtatggcggcacaatcggtggtgttaaatgggtccattgctttgatctcttggt 4027892  T
Q  208 atccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctatat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4027893 atccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctctat 4027992  T
Q  308 tgagagacttattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaa 407  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||| |||| |||||||||||||    
T  4027993 tgagagacctattggagcagggaggaatggtgatatattcttcaaaaaaaaaggtaaaaaaatagtctgctatgatttaagcacacacatggttgaggaa 4028092  T
Q  408 ctcggtcttgaagaagcaccatcaaatagaataat 442  Q
    |||||||||||||||||||||||||||||||||||    
T  4028093 ctcggtcttgaagaagcaccatcaaatagaataat 4028127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 27183901 - 27183965
Alignment:
Q  230 catatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctt 294  Q
    |||||||||||| |||||| ||||||| |  |||||||||| ||||||||||  |||||||||||    
T  27183901 catatcgattttgggtgaaattggtgtcaaagaatcatggattaaactcttcgatattggacctt 27183965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 12724906 - 12724957
Alignment:
Q  229 acatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactctt 280  Q
    |||||| |||||| ||||| |||| ||||| |||||||||||||||||||||    
T  12724906 acatatggattttgggtgagcttgctgtgaatgaatcatggactaaactctt 12724957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 170 - 441
Target Start/End: Original strand, 30249757 - 30250031
Alignment:
Q  170 ggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatgg 269  Q
    |||| ||||||||||||||||||||||||||||||| |||  |   | |||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  30249757 ggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatcatgg 30249856  T
Q  270 actaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatttttc-aaaaaagaa--gatgaaa 366  Q
    |||||||||||||||||||||||||| |||| ||||||||||  || |||||||| ||||| ||||||||||||||| ||| |||||| ||  |||| ||    
T  30249857 actaaactcttcactattggacctttgccctcctatattgaggaacctattggagtagggaagaatggtgatatattcttcgaaaaaataaacgatggaa 30249956  T
Q  367 aaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcaccatcaaatagaataa 441  Q
    || |||||||||||||||||||||||| |||| |||||||| || ||||||||||| ||||||||||||||||||    
T  30249957 aattagtctgctatgatttaagtacacacatgtttgaggaaatcagtcttgaagaaccaccatcaaatagaataa 30250031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 170 - 375
Target Start/End: Original strand, 25628144 - 25628349
Alignment:
Q  170 ggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatgg 269  Q
    |||| |||||||||| ||||| ||||||||||||||||||  | | ||||| |||||| |||||||  ||||||||||||||||||||||||||||||||    
T  25628144 ggtgatgttaaatggttccattgctttgatctcttggtatggagacacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatcatgg 25628243  T
Q  270 actaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaa 369  Q
    ||||||||||||| ||||||||||||  ||  |  | ||  |   | ||||||||||||||| |||||||||||||| ||||||  || ||||| ||||     
T  25628244 actaaactcttcattattggacctttatccgacctttttatgtatcctattggagcagggagtaatggtgatatattcttcaaagcaggagatggaaaac 25628343  T
Q  370 tagtct 375  Q
    ||||||    
T  25628344 tagtct 25628349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 30249588 - 30249701
Alignment:
Q  28 tattatacacgaatgatggaatttgtcattggttgagtaa---tgatgatcaacttttgttggtatcgtttgacctcagcagctatgtgtattttacaac 124  Q
    ||||| |||||||||||||||| ||||||||||||  | |   ||||||||||||||  |||||||| |||||||||||||||||||| | ||| |||||    
T  30249588 tattaaacacgaatgatggaatatgtcattggttgtctgaaactgatgatcaactttgcttggtatcatttgacctcagcagctatgtatttttaacaac 30249687  T
Q  125 aagcaagcccataa 138  Q
    ||||| ||||||||    
T  30249688 aagcacgcccataa 30249701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 5442389 - 5442435
Alignment:
Q  231 atatcgattttaggtgaacttggtgtgagtgaatcatggactaaact 277  Q
    ||||| |||||||||||| |||||||||  |||||||||||||||||    
T  5442389 atatctattttaggtgaaattggtgtgaaagaatcatggactaaact 5442435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 5451399 - 5451445
Alignment:
Q  231 atatcgattttaggtgaacttggtgtgagtgaatcatggactaaact 277  Q
    ||||| |||||||||||| |||||||||  |||||||||||||||||    
T  5451399 atatctattttaggtgaaattggtgtgaaagaatcatggactaaact 5451445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 170 - 375
Target Start/End: Original strand, 30651519 - 30651724
Alignment:
Q  170 ggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatgg 269  Q
    |||| |||||||||| ||||| ||||||||||||||||||  | | ||||| |||||| |||||||  ||||||||||||||||||||||||||||||||    
T  30651519 ggtgatgttaaatggttccattgctttgatctcttggtatgaagatacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatcatgg 30651618  T
Q  270 actaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaa 369  Q
    ||||||||||| | ||||||||||||  ||  |  | ||  |   | ||||||||||||||| |||||||||||||| ||||||  || ||||| ||||     
T  30651619 actaaactctttattattggacctttgtccgacctttttacgtatcctattggagcagggagtaatggtgatatattcttcaaagcaggagatggaaaac 30651718  T
Q  370 tagtct 375  Q
    ||||||    
T  30651719 tagtct 30651724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 170 - 295
Target Start/End: Original strand, 31777865 - 31777990
Alignment:
Q  170 ggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatgg 269  Q
    |||| |||||||||| ||||| ||||||||||||||||||  | | ||| | |||||| |||||||  ||||||||||||||||||||||||||||||||    
T  31777865 ggtgatgttaaatggttccattgctttgatctcttggtatgaatacacggccacctttcacatatcagttttaggtgaacttggtgtgagtgaatcatgg 31777964  T
Q  270 actaaactcttcactattggaccttt 295  Q
    ||||||||||| | ||||||||||||    
T  31777965 actaaactctttattattggaccttt 31777990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 31778012 - 31778070
Alignment:
Q  317 tattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtct 375  Q
    ||||||||||||||| |||||||||||||| ||||||  || ||||| |||| ||||||    
T  31778012 tattggagcagggagtaatggtgatatattcttcaaagcaggagatggaaaactagtct 31778070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 42637420 - 42637352
Alignment:
Q  219 actacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactatt 287  Q
    ||||| ||| ||||||| ||||| |||||| | || ||||  ||||||||||| |||||||||||||||    
T  42637420 actacttttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactcttcactatt 42637352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 292
Target Start/End: Complemental strand, 32744978 - 32744859
Alignment:
Q  173 ggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggact 272  Q
    |||||||||||||||||| || |||||||| |  |||  ||| |||||||| ||| ||||||| ||| | |||||  ||||| |||  |||||||||||     
T  32744978 ggtgttaaatgggtccattgcattgatctcatattatgaaaagacgactacttttcacatatcaattatgggtgagattggtatgaaagaatcatggacc 32744879  T
Q  273 aaactcttcactattggacc 292  Q
    || |||||||||||||||||    
T  32744878 aatctcttcactattggacc 32744859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 1146409 - 1146451
Alignment:
Q  238 ttttaggtgaacttggtgtgagtgaatcatggactaaactctt 280  Q
    ||||||||||  ||||||||||||||| |||||||||||||||    
T  1146409 ttttaggtgagtttggtgtgagtgaattatggactaaactctt 1146451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 48742055 - 48741982
Alignment:
Q  219 actacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacc 292  Q
    |||||||||  |||||| |||||||||||||| |||||||  ||||| |||||||||||||||| | |||||||    
T  48742055 actaccttttgcatatcaattttaggtgaactcggtgtgaaggaatcttggactaaactcttcatttttggacc 48741982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 1327288 - 1327324
Alignment:
Q  246 gaacttggtgtgagtgaatcatggactaaactcttca 282  Q
    ||||||||||| || ||||||||||||||||||||||    
T  1327288 gaacttggtgttagagaatcatggactaaactcttca 1327324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 33622 - 33545
Alignment:
Q  218 gactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggaccttt 295  Q
    |||||| ||| |||| || ||||| ||||||||||||||||  || || |||||||||||||| | |||||| |||||    
T  33622 gactacttttcacatttctattttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgggccttt 33545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 44550561 - 44550488
Alignment:
Q  211 caaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcact 284  Q
    |||| |||||||| ||| | ||||| |||||||||||| | |||||||   ||| |||||||||||||||||||    
T  44550561 caaagacgactacttttcaaatatcaattttaggtgaattcggtgtgaagaaattatggactaaactcttcact 44550488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University