View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19176_low_1 (Length: 711)
Name: NF19176_low_1
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 15 - 658
Target Start/End: Complemental strand, 1354473 - 1353824
Alignment:
| Q |
15 |
attattcttgtaggttctagactgtgatgcacaaagtaatacaaattaaacta----------gagactaatctttcgaggtacgaagattcatttaaag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1354473 |
attattcttgtaggttctagactgtgatgcacaaagcaatacaaattaaattaaattaaattagagactaatctttcgaggtacgaagattcatttaaag |
1354374 |
T |
|
| Q |
105 |
ggttgatctctctcaacaaatgcttttttatacatcctaacgagagattgaattcatgacgatatatttaagaaactcagttatctgccaacaatgtccg |
204 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1354373 |
ggttgatctctttcaacaaatgtttttttatacatcctaatcagagattgaattcatgacgatacatttaagaaactcagttatctgccaacaatgtccg |
1354274 |
T |
|
| Q |
205 |
taaattaaaggtaatattgaaataagtttaatatgattattaatgtacttttattatgatttaacatttaaaaaatgtgcttttgatactcaagtgaagt |
304 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1354273 |
taaattaaagctaatattgaaataagtttaatatgattattaatgtacttttattatgatttaacatttaaaaaatgtgtttttgatactcaagtgaagt |
1354174 |
T |
|
| Q |
305 |
atgatgacaatgttatcaaggcatagaataacttccttgcatatgacgtgtctctttcaaaatagtgtggtgctaatttgctactttgttaggtcaaagt |
404 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
1354173 |
atgatgacaatgttatcaaggcataaaataacttccttgcatatgacgtgtctctttcaaaatagtggggtgctaatttgctactttgttgggtcaaagt |
1354074 |
T |
|
| Q |
405 |
tacacatcagcaatgcctctacatacaataattggagacaaataattgaatgtatgtatcgtgagtgtgacagggacttgattggtgatttatttgacaa |
504 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1354073 |
tacacaccagcaatgcctctacatacaataattggagaaaaataat----tgtatgtatcgtgagtgtgacagggacttgattggtgatttatttgacaa |
1353978 |
T |
|
| Q |
505 |
caaggagatggttggctggttgggaccaattttatcaaggatttatggattttggcatattaatattccaattttacatggaacataacacgtttagttg |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1353977 |
caaggagatggttggctggttgggaccaattttatcaaggatttatggattttggcatattaatattccaattttacatggaacataacacgcttagttg |
1353878 |
T |
|
| Q |
605 |
agtttctatgaatataagataagattagaaaggaagggttgaatcttcaattgc |
658 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
1353877 |
agtttctatgaatataagataatattagaaaggaaggattgaatcttcaattgc |
1353824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 658 - 696
Target Start/End: Complemental strand, 1353805 - 1353767
Alignment:
| Q |
658 |
ctattcaataaaattttgtatgacttctaatatgatgat |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1353805 |
ctattcaataaaattttgtatgacttctaatttgatgat |
1353767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 3746408 - 3746349
Alignment:
| Q |
79 |
ttcgaggtacgaagattcatttaaagggttgatctctctcaacaaatgcttttttataca |
138 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
3746408 |
ttcgaggtactgagatttatttaaagggttgacctctctcaacaaatattttttcataca |
3746349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 29578780 - 29578726
Alignment:
| Q |
85 |
gtacgaagattcatttaaagggttgatctctctcaacaaatgcttttttatacat |
139 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| || || ||||||| |
|
|
| T |
29578780 |
gtacgaagattcatttaaatggttgagatctctcaacaaatactcttctatacat |
29578726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University