View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_low_11 (Length: 418)
Name: NF19176_low_11
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 3110292 - 3110098
Alignment:
| Q |
17 |
aaagggaatcatgttcttgctcaaaatcttgagtttttacttgaaaaccgattggcaagagaacaaatgggaatgaatggaagaaagaaggtgcaaagga |
116 |
Q |
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| T |
3110292 |
aaagggaatcatgttcttgctcaaaatcttgagtttttacttgaaaaccgattggcaagagaacaaatgggaatgaatggaagaaagaaggtgcaaagga |
3110193 |
T |
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| Q |
117 |
tgtatttgaaggagcacatgtatagtaaatttgtagaggttcttgttacgtgcttg-aaagtaaataaataattgcttctcacttgtaattactc |
210 |
Q |
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| T |
3110192 |
tgtatttgaaggagcacatgtatagtaaatttgtagaggttcttgttacgtgcttgtgaagtaaataaataattgcttctcacttgtaattactc |
3110098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 26271493 - 26271681
Alignment:
| Q |
17 |
aaagggaatcatgttcttgctcaaaatcttgagtttttacttgaaaaccgattggcaagagaacaaatgggaatgaatggaagaaagaaggtgcaaagga |
116 |
Q |
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| T |
26271493 |
aaagggaatcatgtccttgctcaaaatcttgagtttttacttgaaaaccgattggcaagagaacaaatgggaatgtatggaagaaagaaggtgcaaagga |
26271592 |
T |
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| Q |
117 |
tgtatttgaaggagcacatgtatagtaaatttgtagaggttcttgttacgtgcttga-aagtaaataaataattgcttctcacttgtaa |
204 |
Q |
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| T |
26271593 |
tgtatttgaaggagcacatgtatagtaaatttgtagaggttcttgttaggtgcatgagaatcaaataaataattgattctcacttgtaa |
26271681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 44064981 - 44065123
Alignment:
| Q |
27 |
atgttcttgctcaaaatcttgagtttttacttgaaaaccgattggcaagagaacaaatgggaatgaatggaagaaagaaggtgcaaaggatgtatttgaa |
126 |
Q |
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| T |
44064981 |
atgtccttgcacagaatcttctgtatttacttaaaaaccagttggcaaggaagcaaatggggatagaaggcaggaaaaaggtggagaggatgtatttgaa |
44065080 |
T |
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| Q |
127 |
ggagcacatgtatagtaaatttgtagaggttcttgttacgtgc |
169 |
Q |
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| T |
44065081 |
gcaacacatgtataagaaatttgttgaggttattgttaggtgc |
44065123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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