View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19176_low_12 (Length: 418)

Name: NF19176_low_12
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19176_low_12
NF19176_low_12
[»] chr6 (11 HSPs)
chr6 (10-243)||(4611040-4611273)
chr6 (239-383)||(4611293-4611438)
chr6 (365-416)||(4611451-4611502)
chr6 (270-344)||(31265835-31265910)
chr6 (243-341)||(14312627-14312723)
chr6 (270-341)||(14306220-14306292)
chr6 (11-73)||(4515685-4515747)
chr6 (240-324)||(7301077-7301158)
chr6 (241-344)||(4238451-4238550)
chr6 (278-344)||(3604576-3604643)
chr6 (271-344)||(15081480-15081554)
[»] scaffold0006 (1 HSPs)
scaffold0006 (270-344)||(229879-229953)
[»] chr7 (19 HSPs)
chr7 (270-373)||(27234559-27234667)
chr7 (281-370)||(11616629-11616723)
chr7 (270-344)||(33584619-33584694)
chr7 (270-344)||(37490594-37490669)
chr7 (291-398)||(45890775-45890888)
chr7 (270-342)||(47454060-47454133)
chr7 (240-344)||(30463045-30463147)
chr7 (240-340)||(31581423-31581521)
chr7 (245-344)||(5724684-5724780)
chr7 (286-347)||(32776055-32776117)
chr7 (270-342)||(38181852-38181925)
chr7 (270-344)||(2846652-2846727)
chr7 (278-344)||(5083448-5083515)
chr7 (240-340)||(23703945-23704043)
chr7 (281-324)||(29434577-29434620)
chr7 (291-344)||(44604454-44604508)
chr7 (270-344)||(7425853-7425929)
chr7 (285-336)||(29645218-29645270)
chr7 (281-344)||(36117729-36117793)
[»] chr8 (25 HSPs)
chr8 (270-370)||(5392105-5392211)
chr8 (270-344)||(45425541-45425616)
chr8 (244-344)||(2349383-2349482)
chr8 (271-373)||(4480412-4480519)
chr8 (270-344)||(44790398-44790473)
chr8 (270-342)||(9014759-9014832)
chr8 (270-342)||(29730874-29730947)
chr8 (281-344)||(5962449-5962513)
chr8 (286-342)||(39171615-39171672)
chr8 (281-344)||(12653754-12653818)
chr8 (281-343)||(21587344-21587403)
chr8 (240-344)||(22324931-22325033)
chr8 (270-344)||(31132786-31132861)
chr8 (281-344)||(38252413-38252478)
chr8 (270-370)||(42412328-42412434)
chr8 (282-373)||(139090-139187)
chr8 (270-338)||(7258349-7258418)
chr8 (244-342)||(34133160-34133256)
chr8 (243-342)||(45197643-45197739)
chr8 (286-318)||(8618200-8618232)
chr8 (270-368)||(27973633-27973737)
chr8 (270-368)||(28030902-28031006)
chr8 (293-344)||(28802846-28802898)
chr8 (286-341)||(31410587-31410643)
chr8 (243-344)||(32967253-32967352)
[»] chr4 (27 HSPs)
chr4 (270-343)||(4360385-4360459)
chr4 (281-343)||(283454-283517)
chr4 (270-344)||(18849735-18849810)
chr4 (243-373)||(38160094-38160227)
chr4 (270-398)||(22872303-22872439)
chr4 (270-344)||(8295085-8295160)
chr4 (270-324)||(41436537-41436591)
chr4 (196-242)||(49448763-49448809)
chr4 (294-373)||(17237123-17237208)
chr4 (270-342)||(49812285-49812358)
chr4 (270-342)||(4727577-4727649)
chr4 (270-318)||(28974362-28974410)
chr4 (281-343)||(39976371-39976430)
chr4 (241-373)||(41203767-41203902)
chr4 (269-344)||(42185772-42185848)
chr4 (174-242)||(44022018-44022085)
chr4 (269-324)||(33047547-33047602)
chr4 (270-344)||(49448897-49448972)
chr4 (270-344)||(54729460-54729535)
chr4 (269-342)||(4357622-4357696)
chr4 (291-344)||(49306664-49306718)
chr4 (281-318)||(3686078-3686115)
chr4 (266-323)||(28279889-28279946)
chr4 (281-317)||(27977214-27977250)
chr4 (281-317)||(35909577-35909613)
chr4 (285-344)||(38977063-38977123)
chr4 (270-368)||(52676978-52677082)
[»] chr3 (22 HSPs)
chr3 (243-400)||(53876351-53876511)
chr3 (270-342)||(43639494-43639567)
chr3 (281-344)||(9017868-9017932)
chr3 (240-347)||(48744288-48744394)
chr3 (270-400)||(54122139-54122275)
chr3 (270-344)||(39866529-39866604)
chr3 (281-373)||(2868641-2868739)
chr3 (281-376)||(10855061-10855162)
chr3 (269-344)||(5245467-5245543)
chr3 (244-324)||(41031605-41031685)
chr3 (270-344)||(11251103-11251178)
chr3 (270-344)||(21296479-21296554)
chr3 (294-344)||(26134679-26134730)
chr3 (270-344)||(33994713-33994788)
chr3 (270-398)||(17776911-17777045)
chr3 (270-398)||(19078212-19078346)
chr3 (281-344)||(32023076-32023141)
chr3 (245-344)||(32827280-32827377)
chr3 (270-397)||(14756032-14756165)
chr3 (288-400)||(39364952-39365071)
chr3 (243-317)||(54458313-54458384)
chr3 (281-343)||(36097632-36097695)
[»] chr1 (28 HSPs)
chr1 (243-340)||(17342860-17342955)
chr1 (243-344)||(32587797-32587896)
chr1 (240-344)||(26756005-26756107)
chr1 (286-399)||(49945004-49945123)
chr1 (244-344)||(50267415-50267513)
chr1 (270-344)||(52830391-52830466)
chr1 (240-324)||(28277036-28277117)
chr1 (281-344)||(32348285-32348349)
chr1 (270-344)||(3555532-3555607)
chr1 (196-243)||(13500862-13500909)
chr1 (270-344)||(42926190-42926265)
chr1 (270-344)||(51749160-51749235)
chr1 (247-342)||(19532898-19532991)
chr1 (266-344)||(21304784-21304862)
chr1 (270-338)||(17724697-17724766)
chr1 (270-368)||(34813973-34814077)
chr1 (281-324)||(8773309-8773352)
chr1 (270-344)||(27391403-27391478)
chr1 (270-344)||(28839395-28839470)
chr1 (244-344)||(36467172-36467270)
chr1 (286-344)||(52432384-52432443)
chr1 (286-344)||(2571435-2571492)
chr1 (286-398)||(16040149-16040267)
chr1 (270-324)||(34877088-34877142)
chr1 (290-344)||(43895923-43895977)
chr1 (294-344)||(10370161-10370213)
chr1 (266-323)||(40019059-40019116)
chr1 (270-344)||(45889224-45889300)
[»] chr2 (24 HSPs)
chr2 (270-344)||(28572264-28572338)
chr2 (243-344)||(23684991-23685090)
chr2 (244-344)||(30757544-30757642)
chr2 (243-401)||(28301466-28301627)
chr2 (286-400)||(28527036-28527156)
chr2 (270-344)||(2882041-2882116)
chr2 (240-344)||(24775784-24775886)
chr2 (281-342)||(15859323-15859385)
chr2 (270-324)||(18181210-18181264)
chr2 (281-342)||(28108353-28108415)
chr2 (270-342)||(3100456-3100529)
chr2 (270-373)||(43950390-43950499)
chr2 (286-400)||(9724950-9725070)
chr2 (281-344)||(36155580-36155644)
chr2 (293-344)||(40965093-40965145)
chr2 (270-344)||(565145-565220)
chr2 (270-344)||(2756730-2756805)
chr2 (244-344)||(28925824-28925922)
chr2 (240-344)||(43077702-43077804)
chr2 (270-344)||(7649952-7650026)
chr2 (291-344)||(33755334-33755388)
chr2 (161-234)||(5007686-5007759)
chr2 (243-344)||(435054-435153)
chr2 (270-344)||(13375164-13375240)
[»] chr5 (21 HSPs)
chr5 (269-344)||(11099454-11099530)
chr5 (270-344)||(3725242-3725317)
chr5 (244-344)||(7613740-7613838)
chr5 (244-341)||(25814397-25814492)
chr5 (269-364)||(35666940-35667039)
chr5 (281-344)||(39008199-39008263)
chr5 (270-344)||(33988256-33988331)
chr5 (245-344)||(6610871-6610968)
chr5 (270-324)||(8369694-8369748)
chr5 (281-373)||(15814709-15814807)
chr5 (270-342)||(8692797-8692870)
chr5 (167-243)||(12678268-12678345)
chr5 (270-342)||(35646068-35646141)
chr5 (243-324)||(20189924-20190002)
chr5 (286-344)||(41184732-41184791)
chr5 (270-344)||(42575615-42575690)
chr5 (270-373)||(858391-858500)
chr5 (286-347)||(17741145-17741205)
chr5 (270-373)||(36469037-36469146)
chr5 (183-243)||(31956640-31956700)
chr5 (270-318)||(32539718-32539766)
[»] scaffold0321 (1 HSPs)
scaffold0321 (270-343)||(9529-9603)
[»] scaffold0034 (1 HSPs)
scaffold0034 (281-344)||(98892-98956)
[»] scaffold0578 (1 HSPs)
scaffold0578 (161-234)||(3919-3992)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 4611040 - 4611273
Alignment:
Q  10 catcatcagcaagagttcctaaatttaagttgtgattctggcaaatcttaaatggtttaagtatatgcaattgaataattatatgtcaagcataaaaaat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4611040 catcatcagcaagagttcctaaatttaagttgtgattctggcaaatcttaaatggtttaagtatatgcaattgattaattatatgtcaagcataaaaaat 4611139  T
Q  110 ttcatagagttaaattttgcaacttcagtctatactcaannnnnnnaattgatttgctactcattccgtcctttaataaatgatcattttgtaaaaaatt 209  Q
    ||||||||||||||||||||||||||| ||||||||||        ||||| ||| |||||||||| || ||||||||| ||||||||||||||||||||    
T  4611140 ttcatagagttaaattttgcaacttcaatctatactcattttttttaattgttttactactcattctgtactttaataagtgatcattttgtaaaaaatt 4611239  T
Q  210 attgttttaaaataacttatccatttcacttttt 243  Q
    |||||||||||||||||||||||||| |||||||    
T  4611240 attgttttaaaataacttatccattttacttttt 4611273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 239 - 383
Target Start/End: Original strand, 4611293 - 4611438
Alignment:
Q  239 tttttcaattcaatatatttc-aatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcat 337  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  4611293 tttttcaattcaatttatttccaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaatcattttctctatccttcat 4611392  T
Q  338 ttatacacttaataaatgtgaaatgagcaaatgactaagtgaattt 383  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  4611393 ttatacatttaataaatgtgaaatgagcaaatgactaagtgaattt 4611438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 365 - 416
Target Start/End: Original strand, 4611451 - 4611502
Alignment:
Q  365 caaatgactaagtgaatttaggactgagggagtattatttttgggcaaaaaa 416  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  4611451 caaatgactaagtgaatttaggaccgagggagtattatttttggggaaaaaa 4611502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 31265835 - 31265910
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    ||||||| || |||| |||||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||    
T  31265835 atttatgatagtggagaatgcaccaatacttaacaagagcacttaaaactatttttctctctccttcatttataca 31265910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 341
Target Start/End: Complemental strand, 14312723 - 14312627
Alignment:
Q  243 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttat 341  Q
    ||||||||||| |||||| ||||    ||||||| ||||||| |||||||||||||||||||||| ||||||||| || |||||| | ||||||||||||    
T  14312723 tcaattcaatacatttcactttac---atttatgataatggagaatgcaccaatacttaacaaaaacacttaaaaccatttttctatgtccttcatttat 14312627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 14306292 - 14306220
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttat 341  Q
    ||||||| ||||||| |||||||||||||||||||||| ||||||||| || |||||| | ||||||||||||    
T  14306292 atttatgataatggagaatgcaccaatacttaacaaaaacacttaaaaccatttttctatgtccttcatttat 14306220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 4515747 - 4515685
Alignment:
Q  11 atcatcagcaagagttcctaaatttaagttgtgattctggcaaatcttaaatggtttaagtat 73  Q
    |||||||||  ||||||||||| | |||||||||||||||| ||||||||||| ||| |||||    
T  4515747 atcatcagctggagttcctaaactgaagttgtgattctggctaatcttaaatgttttgagtat 4515685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 7301158 - 7301077
Alignment:
Q  240 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 324  Q
    |||||||||||||||||| || ||||    ||||||| ||||||| ||||||| |||||||||||||  |||||||||| |||||    
T  7301158 ttttcaattcaatatattccactttac---atttatgataatggagaatgcacaaatacttaacaaacacacttaaaactatttt 7301077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 344
Target Start/End: Original strand, 4238451 - 4238550
Alignment:
Q  241 tttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcattta 340  Q
    ||||||||||||| |||||| ||||    ||||||| || || | |||||||||||||||||||| |||||||||||| || || ||| || ||||||||    
T  4238451 tttcaattcaatagatttcactttac---atttatgatagtgaagaatgcaccaatacttaacaagagcacttaaaactatatt-tctctctttcattta 4238546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 3604643 - 3604576
Alignment:
Q  278 taatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| |||||||||||||||||||| || |||||||| || |||||||| || || |||||||||    
T  3604643 taatggagaatgcaccaatacttaacaagagaacttaaaaccatttttctctctcttttatttataca 3604576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 15081480 - 15081554
Alignment:
Q  271 tttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    |||||| || |||| ||||||| ||||||||||||  ||||||||||| | ||||||||  ||||||||||||||    
T  15081480 tttatgatagtggagaatgcacaaatacttaacaagtgcacttaaaactatttttctctcaccttcatttataca 15081554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 229879 - 229953
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttataca 344  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||| | |||||||||||||||    
T  229879 atttatgataatggagaatgcaccaatacttaacaagagcacttaaaacatttttctatctccttcatttataca 229953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 270 - 373
Target Start/End: Original strand, 27234559 - 27234667
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttataca-----cttaataaatgtgaaatgag 364  Q
    ||||||| || |||| |||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||     |||||||  ||||||||||     
T  27234559 atttatgatagtggagaatgcatcaatacttaacaaaaacacttaaaacaattttctctgtcattcatttatacatttttcttaatatgtgtgaaatgaa 27234658  T
Q  365 caaatgact 373  Q
    |||||||||    
T  27234659 caaatgact 27234667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 11616629 - 11616723
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca----cttaataaatgtgaaatgagcaaatg 370  Q
    |||| |||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||     ||||||  |||||||||||||||||    
T  11616629 tggagaatgcaccaatacttaacaagagcacttaaaaccatttttctctctccttcatttatacatttttttaatatgtgtgaaatgagcaaatg 11616723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 33584619 - 33584694
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| ||| |||||||||||||||| ||||||||||| || |||||||| |||||||||||||||    
T  33584619 atttatgatactggagaatacaccaatacttaacaatagcacttaaaaccatttttctctctccttcatttataca 33584694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 37490669 - 37490594
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| ||||||||||||||||| |||| ||||||||| || |||||||| |||||||||||||||    
T  37490669 atttatgatagtggagaatgcaccaatacttaaaaaaaacacttaaaatcatttttctctctccttcatttataca 37490594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 398
Target Start/End: Complemental strand, 45890888 - 45890775
Alignment:
Q  291 accaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca-----cttaataaatgtgaaatgagcaaatgactaagtgaattta 384  Q
    |||||||||||||||||||| |||||| || |||||||| |||||| ||||||||     |||||||  |||||||||| ||||| ||| ||| |||| |    
T  45890888 accaatacttaacaaaagcatttaaaaccatttttctctctccttcttttatacatttttcttaatacgtgtgaaatgaacaaataactcagttaattca 45890789  T
Q  385 ggactgagggagta 398  Q
    |||| |||||||||    
T  45890788 ggacggagggagta 45890775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 47454060 - 47454133
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttata 342  Q
    ||||||| || |||| ||||||||||||||||||||  ||||||||||| ||||| |||| |||||||||||||    
T  47454060 atttatgatagtggagaatgcaccaatacttaacaagtgcacttaaaactattttactctctccttcatttata 47454133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 30463045 - 30463147
Alignment:
Q  240 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatt 338  Q
    |||||||||||||||||| || ||||    ||||||| |  |||| ||||||||||||||||||||  ||||||||||| | |||||||| || ||||||    
T  30463045 ttttcaattcaatatattccattttac---atttatgattgtggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctctcattcatt 30463141  T
Q  339 tataca 344  Q
    ||||||    
T  30463142 tataca 30463147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 31581521 - 31581423
Alignment:
Q  240 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatt 338  Q
    |||||||||||||||||| || ||||    ||||||| || |||| ||||||||||||||||||||| | ||||||||| | |||| ||| |||||||||    
T  31581521 ttttcaattcaatatattccattttac---atttatgatattggagaatgcaccaatacttaacaaatgtacttaaaactatttttatctctccttcatt 31581425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 344
Target Start/End: Complemental strand, 5724780 - 5724684
Alignment:
Q  245 aattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatac 343  Q
    |||||||||||||||| ||||    ||||||| || |||| ||||||| ||||||||||||  ||||||||||| ||||| |||| ||||||||||||||    
T  5724780 aattcaatatatttcactttac---atttatgatagtggagaatgcactaatacttaacaag-gcacttaaaactatttttctctctccttcatttatac 5724685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 32776055 - 32776117
Alignment:
Q  286 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacactt 347  Q
    ||||||||||||||||||||| ||||| |||| || |||||||| ||||||| ||||||||||    
T  32776055 aatgcaccaatacttaacaaaggcactcaaaaccatttttctctctccttcacttatacactt 32776117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 38181925 - 38181852
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttata 342  Q
    ||||||| || ||||||||||||||||||||| ||| | ||||||||| || |||||||| || ||||||||||    
T  38181925 atttatgatagtggaaaatgcaccaatacttaccaagaacacttaaaaccatttttctctctctttcatttata 38181852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 2846727 - 2846652
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    ||||||| || |||| |||  ||||||||||||||| |||||||||||| | |||||||| || ||||||||||||    
T  2846727 atttatgatagtggagaatagaccaatacttaacaagagcacttaaaactatttttctctctcgttcatttataca 2846652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 5083515 - 5083448
Alignment:
Q  278 taatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    |||||||  ||||||||||||||||||| |||||||||||| | |||| ||| ||||| |||||||||    
T  5083515 taatggagtatgcaccaatacttaacaagagcacttaaaactatttttatctttcctttatttataca 5083448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 23703945 - 23704043
Alignment:
Q  240 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatt 338  Q
    |||||||||||||||||||||   | ||| ||||||| || |||| |||||| ||||| |||||||  || |||||||| | |||||||| |||||||||    
T  23703945 ttttcaattcaatatatttca---ttttacatttatgatagtggagaatgcagcaataattaacaagtgcgcttaaaactatttttctctctccttcatt 23704041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 29434620 - 29434577
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 324  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||    
T  29434620 tggagaatccaccaatacttaacaaaagcacttaaaactatttt 29434577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 44604508 - 44604454
Alignment:
Q  291 accaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||||||||||| | ||||||||| || |||||||| |||||||||||||||    
T  44604508 accaatacttaacaagaacacttaaaatcatttttctctctccttcatttataca 44604454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 7425929 - 7425853
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatactt-aacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| ||||||||||||||| ||||| | ||||||||| || |||||||| || ||||||||||||    
T  7425929 atttatgatagtggagaatgcaccaatacttaaacaagaacacttaaaaccatttttctctctcattcatttataca 7425853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 336
Target Start/End: Complemental strand, 29645270 - 29645218
Alignment:
Q  285 aaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttca 336  Q
    ||||||||||||||||||||| | |||||||||  |||||||||| |||||||    
T  29645270 aaatgcaccaatacttaacaagaacacttaaaattaattttctctctccttca 29645218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 36117729 - 36117793
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    |||| ||||||| ||||||||||||  ||||||||||| | |||||||| ||||| |||||||||    
T  36117729 tggagaatgcacaaatacttaacaagtgcacttaaaactatttttctctttcctttatttataca 36117793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 370
Target Start/End: Original strand, 5392105 - 5392211
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| || |||| ||||||||||||||| |||||||||||||||| || |||||||| |||||||||||||||     |||||||  ||||||||||    
T  5392105 atttatgatagtggagaatgcaccaatacttgacaaaagcacttaaaaccatttttctctctccttcatttatacatttgtcttaataggtgtgaaatga 5392204  T
Q  364 gcaaatg 370  Q
    |||||||    
T  5392205 gcaaatg 5392211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 45425541 - 45425616
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattt-tctctatccttcatttataca 344  Q
    ||||||| || ||||||||||| ||||||||||||| |||||||||||| |||| ||||| |||||||||||||||    
T  45425541 atttatgatagtggaaaatgcatcaatacttaacaagagcacttaaaaccatttgtctctctccttcatttataca 45425616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 2349383 - 2349482
Alignment:
Q  244 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaa--ttttctctatccttcatttat 341  Q
    |||||||||||||| |||||||    ||||||| || |||| ||||||| ||||||||||||| ||||||||||| |  |||||||| ||||||||||||    
T  2349383 caattcaatatattccaatttac---atttatgatagtggagaatgcacaaatacttaacaaatgcacttaaaactattttttctctctccttcatttat 2349479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 373
Target Start/End: Complemental strand, 4480519 - 4480412
Alignment:
Q  271 tttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttataca-----cttaataaatgtgaaatgagc 365  Q
    |||||| || |||| ||||||||||||| ||||||||| | |||||| | |||||||| || ||||||||||||     ||||||| |||| ||||||||    
T  4480519 tttatgatactggagaatgcaccaatacataacaaaagtatttaaaatatttttctctctctttcatttatacatttttcttaatatatgttaaatgagc 4480420  T
Q  366 aaatgact 373  Q
    ||||||||    
T  4480419 aaatgact 4480412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 44790473 - 44790398
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    ||||||| || |||| ||||||||||||||||||||  ||||||||||| | |||||||| |||||||||||||||    
T  44790473 atttatgatagtggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctctccttcatttataca 44790398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 9014759 - 9014832
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttata 342  Q
    ||||||| || |||| |||||| ||||||||||||||||||||||||| || |||||||| | |||||||||||    
T  9014759 atttatgatagtggagaatgcatcaatacttaacaaaagcacttaaaatcatttttctctcttcttcatttata 9014832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 29730947 - 29730874
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttata 342  Q
    ||||||| || |||| |||||||||||||||||||| | ||||||||| || |||||||| |||||||||||||    
T  29730947 atttatgatagtggagaatgcaccaatacttaacaagaacacttaaaaccacttttctctctccttcatttata 29730874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 344
Target Start/End: Complemental strand, 5962513 - 5962449
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    |||| |||||||||||||||||||||||||||||||||   |||||| | |||||||||||||||    
T  5962513 tggagaatgcaccaatacttaacaaaagcacttaaaacgttttttctatctccttcatttataca 5962449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 39171615 - 39171672
Alignment:
Q  286 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttata 342  Q
    |||||| |||||||||||||||| |||||||| || |||||||| |||||||||||||    
T  39171615 aatgcatcaatacttaacaaaagtacttaaaaccatttttctctctccttcatttata 39171672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 12653754 - 12653818
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    |||| |||||||||||| |||||||| ||||||||||| | |||||||| | |||||||||||||    
T  12653754 tggataatgcaccaatatttaacaaacgcacttaaaactatttttctctctacttcatttataca 12653818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 21587344 - 21587403
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatac 343  Q
    |||| |||||||||||||||||||| ||||||||||||    |||||| ||||||||||||||    
T  21587344 tggagaatgcaccaatacttaacaagagcacttaaaac---cttctctctccttcatttatac 21587403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 344
Target Start/End: Complemental strand, 22325033 - 22324931
Alignment:
Q  240 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatt 338  Q
    |||||||||||||||||| || ||||    ||||||| || |||||||||||| |||| |||||||   |||||||||  ||||| |||| |||||||||    
T  22325033 ttttcaattcaatatattccactttac---atttatgatagtggaaaatgcactaatatttaacaagtacacttaaaattatttttctctctccttcatt 22324937  T
Q  339 tataca 344  Q
    ||||||    
T  22324936 tataca 22324931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 31132786 - 31132861
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| |||  ||||||||||||||| ||||||||||| || ||||||||||||||| | ||||||    
T  31132786 atttatgatactggagaatataccaatacttaacaagagcacttaaaatcatttttctctatccttcgtctataca 31132861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 344
Target Start/End: Complemental strand, 38252478 - 38252413
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaacaa--ttttctctatccttcatttataca 344  Q
    |||| ||||||| ||||||||||||  ||||||||||| |  |||||||| |||||||||||||||    
T  38252478 tggagaatgcactaatacttaacaagtgcacttaaaactattttttctctctccttcatttataca 38252413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 42412434 - 42412328
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| ||||||| ||||||||||||  | |||| |||||||||||| | |||||||| || |||| |||||||     |||||||  ||||||||||    
T  42412434 atttatgataatggagaatgcaccaatatatgacaagagcacttaaaactatttttctctctcattcacttatacatttttcttaatatgtgtgaaatga 42412335  T
Q  364 gcaaatg 370  Q
    |||||||    
T  42412334 gcaaatg 42412328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 373
Target Start/End: Original strand, 139090 - 139187
Alignment:
Q  282 ggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca-----cttaataaatgtgaaatgagcaaatgact 373  Q
    |||||||||||||||||||||||| || | |||||| || |||| ||| || ||||||||||||     |||||||  ||||||||||| ||||||||    
T  139090 ggaaaatgcaccaatacttaacaagagaatttaaaatcatttttatctctcattcatttatacatttttcttaatatgtgtgaaatgagtaaatgact 139187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 7258418 - 7258349
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatt 338  Q
    ||||||| |||||  |||||||||||||||| |||| ||| ||||||| || |||||||| |||||||||    
T  7258418 atttatgataatgataaatgcaccaatacttgacaagagcgcttaaaaccatttttctctttccttcatt 7258349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 342
Target Start/End: Original strand, 34133160 - 34133256
Alignment:
Q  244 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttata 342  Q
    ||||||||||||||||| ||||    ||||||| || |||| ||||| ||||||||||||||  ||||||||||  | |||||||| ||||| |||||||    
T  34133160 caattcaatatatttcattttac---atttatgatagtggagaatgcgccaatacttaacaagtgcacttaaaattatttttctctctcctttatttata 34133256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 342
Target Start/End: Original strand, 45197643 - 45197739
Alignment:
Q  243 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttata 342  Q
    |||||||||||||||||| ||||    |||||||  | || | |||||| ||||||||||||||| |||||||||  ||||| ||| || ||||||||||    
T  45197643 tcaattcaatatatttcattttac---atttatgacagtgaagaatgcatcaatacttaacaaaaacacttaaaatcattttttctctcattcatttata 45197739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 8618200 - 8618232
Alignment:
Q  286 aatgcaccaatacttaacaaaagcacttaaaac 318  Q
    |||||||||||||||||||||| ||||||||||    
T  8618200 aatgcaccaatacttaacaaaaacacttaaaac 8618232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 368
Target Start/End: Complemental strand, 27973737 - 27973633
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| |||||| ||||| | |||||||| |||| | |||||||||| ||||| ||| |||||||| | |||||     |||||||| ||||||||||    
T  27973737 atttatgataatggtaaatggatcaatacttgacaagaacacttaaaaccatttttctccatccttcactaatacatttttcttaataagtgtgaaatga 27973638  T
Q  364 gcaaa 368  Q
    |||||    
T  27973637 gcaaa 27973633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 368
Target Start/End: Complemental strand, 28031006 - 28030902
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| |||||| ||||| | |||||||| |||| | |||||||||| ||||| ||| |||||||| | |||||     |||||||| ||||||||||    
T  28031006 atttatgataatggtaaatggatcaatacttgacaagaacacttaaaaccatttttctccatccttcactaatacatttttcttaataagtgtgaaatga 28030907  T
Q  364 gcaaa 368  Q
    |||||    
T  28030906 gcaaa 28030902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 28802846 - 28802898
Alignment:
Q  293 caatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||||||||| ||||||||||| || |||||||| || ||||||||||||    
T  28802846 caatacttaacaagagcacttaaaaccatttttctctctctttcatttataca 28802898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 31410643 - 31410587
Alignment:
Q  286 aatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttat 341  Q
    |||||||||||| ||||||||| ||||||||||   |||||||| ||||||||||||    
T  31410643 aatgcaccaatatttaacaaaaacacttaaaactgtttttctctctccttcatttat 31410587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 344
Target Start/End: Complemental strand, 32967352 - 32967253
Alignment:
Q  243 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttat 341  Q
    ||||||||||||||| || ||||    ||||||| || |||| |||| |||||||||||| ||  ||||||||||| | |||||||| | ||||||||||    
T  32967352 tcaattcaatatattccactttaa---atttatgatagtggagaatggaccaatacttaagaagtgcacttaaaactatttttctctcttcttcatttat 32967256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 4360459 - 4360385
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatac 343  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| || |||||||| || |||||||||||    
T  4360459 atttatgctagtggagaatgcaccaatacttaacaaaagcacttaaaaccatttttctctttcattcatttatac 4360385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 283517 - 283454
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttatac 343  Q
    |||| ||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  283517 tggagaatgcacaaatacttaacaagagcacttaaaacaatttttctctctccttcatttatac 283454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 18849810 - 18849735
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaat-tttctctatccttcatttataca 344  Q
    ||||||| || |||| |||||||||||||||||||| |||||||||||| || ||||| | |||||||||||||||    
T  18849810 atttatgatagtggagaatgcaccaatacttaacaagagcacttaaaaccatatttctttctccttcatttataca 18849735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 373
Target Start/End: Complemental strand, 38160227 - 38160094
Alignment:
Q  243 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttat 341  Q
    |||||||||||||||||| ||| |   ||||||| ||||||| |||||| ||||| || |||||  |||||||||||| |||||||| ||||| ||||||    
T  38160227 tcaattcaatatatttcactttgt---atttatgataatggagaatgcatcaatatttgacaaagacacttaaaacaatttttctctctcctttatttat 38160131  T
Q  342 aca-----cttaataaatgtgaaatgagcaaatgact 373  Q
    |||     ||||||| || | ||||||||||||||||    
T  38160130 acatttttcttaatatatataaaatgagcaaatgact 38160094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 398
Target Start/End: Complemental strand, 22872439 - 22872303
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaa--agcacttaaaa-caattttctctatccttcatttataca-----cttaataaatgtgaaat 361  Q
    ||||||| ||||||| ||||||||||||||| |||||  ||||||||||| || |||||||| | ||||| |||||||     |||||||  ||||||||    
T  22872439 atttatgataatggagaatgcaccaatacttgacaaacgagcacttaaaaccatttttctctcttcttcacttatacatttttcttaatatgtgtgaaat 22872340  T
Q  362 gagcaaatgactaagtgaatttaggactgagggagta 398  Q
    ||||||||| || | | ||||| |||| |||||||||    
T  22872339 gagcaaatggctcacttaatttgggacggagggagta 22872303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 8295085 - 8295160
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttataca 344  Q
    ||||||| || |||| |||||||||||||||| ||| || ||||||||||| |||||||| || ||||||||||||    
T  8295085 atttatgatagtggagaatgcaccaatacttatcaagaggacttaaaacaatttttctctctctttcatttataca 8295160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 41436537 - 41436591
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 324  Q
    ||||||| || |||| ||||||||||||| ||||||||||||||||||| |||||    
T  41436537 atttatgatagtggagaatgcaccaatacataacaaaagcacttaaaaccatttt 41436591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 49448763 - 49448809
Alignment:
Q  196 ttttgtaaaaaattattgttttaaaataacttatccatttcactttt 242  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||||    
T  49448763 ttttgtaaaaaattattttcttaaaataactgatccatttcactttt 49448809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 17237123 - 17237208
Alignment:
Q  294 aatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca-----cttaataaatgtgaaatgagcaaatgact 373  Q
    |||||||||||||| |||||||||| | |||||||| ||||||||||||| |     |||||||  ||||||||||||||||||||    
T  17237123 aatacttaacaaaatcacttaaaactatttttctctctccttcatttatatatttttcttaataggtgtgaaatgagcaaatgact 17237208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 49812285 - 49812358
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 342  Q
    ||||||| || |||| ||||||||||||||||||||  ||||||||||| | |||| ||| |||||||||||||    
T  49812285 atttatgatagtggataatgcaccaatacttaacaagtgcacttaaaactatttttttctctccttcatttata 49812358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 4727577 - 4727649
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttata 342  Q
    ||||||| |||||||||||||| ||||| ||||||| | || ||||| || |||||||| ||||||| |||||    
T  4727577 atttatgataatggaaaatgcatcaatatttaacaagaacatttaaatcatttttctctctccttcaattata 4727649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 28974362 - 28974410
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac 318  Q
    ||||||| ||||||| |||||||||||||||||||| | ||||||||||    
T  28974362 atttatgataatggagaatgcaccaatacttaacaacaacacttaaaac 28974410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 39976430 - 39976371
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatac 343  Q
    |||| |||||||||||||||||||| ||||||||||||    |||||| ||||||||||||||    
T  39976430 tggagaatgcaccaatacttaacaagagcacttaaaac---cttctctctccttcatttatac 39976371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 373
Target Start/End: Original strand, 41203767 - 41203902
Alignment:
Q  241 tttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcattt 339  Q
    ||||||||||||||||| || ||| |   ||||||| || || | |||||| ||||||||||||| |||||| |||| || |||||| | ||||||||||    
T  41203767 tttcaattcaatatattccactttgt---atttatggtagtgaagaatgcatcaatacttaacaagagcactaaaaaccatttttctatctccttcattt 41203863  T
Q  340 ataca-----cttaataaatgtgaaatgagcaaatgact 373  Q
    |||||     |||||||  ||||||| ||||||||||||    
T  41203864 atacatttttcttaatacgtgtgaaacgagcaaatgact 41203902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 344
Target Start/End: Complemental strand, 42185848 - 42185772
Alignment:
Q  269 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    |||||||| || |||| |||  ||||||||||||||| ||||||||||| || |||||| | |||||||||||||||    
T  42185848 tatttatgatagtggataatagaccaatacttaacaagagcacttaaaatcatttttctatctccttcatttataca 42185772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 44022085 - 44022018
Alignment:
Q  174 tccgtcctttaataaatgatcattttgtaaaaaattattgttttaaaataacttatccatttcactttt 242  Q
    ||||||| || |||| |||||||||||||||||| |||||| ||||||||| | |||||||||| ||||    
T  44022085 tccgtcccttcataattgatcattttgtaaaaaa-tattgtcttaaaataattgatccatttcaatttt 44022018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 33047547 - 33047602
Alignment:
Q  269 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 324  Q
    |||||||| || |||| |||  |||||||||||||||||||||||||||| |||||    
T  33047547 tatttatgatagtggagaatctaccaatacttaacaaaagcacttaaaaccatttt 33047602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 49448897 - 49448972
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| |||| || ||||||| ||||||| |||| ||||||||||| || |||||||| ||||||| |||||||    
T  49448897 atttatgataatagagaatgcacaaatacttgacaagagcacttaaaaccatttttctctctccttcacttataca 49448972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 54729535 - 54729460
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    ||||||| || |||| ||| ||| |||||||||||||| |||||||||| | |||||||| || ||||||||||||    
T  54729535 atttatgatagtggagaatacactaatacttaacaaaaacacttaaaactatttttctctctctttcatttataca 54729460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 4357622 - 4357696
Alignment:
Q  269 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttata 342  Q
    |||||||| || || | ||| |||||||||||||||||| ||||||||| ||  ||||||| |||||||||||||    
T  4357622 tatttatgatagtgaagaatccaccaatacttaacaaaaacacttaaaatcatctttctctctccttcatttata 4357696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 49306664 - 49306718
Alignment:
Q  291 accaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||||||||||| ||||||||||| || |||||||| || ||||||||||||    
T  49306664 accaatacttaacaagagcacttaaaaccatttttctctctctttcatttataca 49306718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 3686078 - 3686115
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaac 318  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  3686078 tggagaatgcaccaatacttaacaaaagtacttaaaac 3686115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 28279889 - 28279946
Alignment:
Q  266 ttatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattt 323  Q
    ||||||||||| ||| | |||||||||||||||||||||||  |||| ||||| ||||    
T  28279889 ttatatttatgataaagaaaaatgcaccaatacttaacaaagacactcaaaactattt 28279946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 27977214 - 27977250
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaa 317  Q
    |||| |||||||||||||||||||||| |||||||||    
T  27977214 tggagaatgcaccaatacttaacaaaaacacttaaaa 27977250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 35909613 - 35909577
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaa 317  Q
    ||||||||||||||||||||||||||  |||||||||    
T  35909613 tggaaaatgcaccaatacttaacaaatacacttaaaa 35909577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 38977063 - 38977123
Alignment:
Q  285 aaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    |||||||||||||||||| ||  ||||||||||| | |||||||| | |||||||||||||    
T  38977063 aaatgcaccaatacttaagaagtgcacttaaaactatttttctctcttcttcatttataca 38977123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 368
Target Start/End: Complemental strand, 52677082 - 52676978
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| |||||  ||||||| ||||||||| ||| ||||||||||| || |||||||| || |||| | |||||     |||||||||| ||||||||    
T  52677082 atttatgataatgataaatgcatcaatacttatcaagagcacttaaaatcatttttctctttcattcactaatacatttttcttaataaatatgaaatga 52676983  T
Q  364 gcaaa 368  Q
    |||||    
T  52676982 gcaaa 52676978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 53876511 - 53876351
Alignment:
Q  243 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttat 341  Q
    |||||||||||||||||| ||||    ||||||| || |||||||||||| |||| ||||||||||||||||||| || |||| ||  ||||||||||||    
T  53876511 tcaattcaatatatttcactttac---atttatgatagtggaaaatgcacaaatatttaacaaaagcacttaaaatcatttttttcactccttcatttat 53876415  T
Q  342 aca-----cttaataaatgtgaaatgagcaaatgactaagtgaatttaggactgagggagtatt 400  Q
    |||     |||||||  | |||||| | ||||||||| ||| |||| ||||| |||||||||||    
T  53876414 acatttttcttaatatctatgaaataaacaaatgactcagttaattgaggacggagggagtatt 53876351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 43639567 - 43639494
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttata 342  Q
    ||||||| || ||||||||||| ||||||||||||| ||||||||||| || |||||||| |||||||||||||    
T  43639567 atttatgatagtggaaaatgcatcaatacttaacaacagcacttaaaaccatttttctctctccttcatttata 43639494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 9017868 - 9017932
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    |||| ||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||    
T  9017868 tggagaatgcaccaatacttaacaaaagcacttaaaactatttttctctctctttcatttataca 9017932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 347
Target Start/End: Original strand, 48744288 - 48744394
Alignment:
Q  240 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatc--cttcat 337  Q
    ||||||||||||||||||||| ||||    ||||||| || |||| |||||| |||||||||||||| ||||||||||| ||||| | | ||  ||||||    
T  48744288 ttttcaattcaatatatttcactttac---atttatgatagtggagaatgcatcaatacttaacaaatgcacttaaaactattttttttttcttcttcat 48744384  T
Q  338 ttatacactt 347  Q
    ||||||||||    
T  48744385 ttatacactt 48744394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 400
Target Start/End: Complemental strand, 54122275 - 54122139
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| || |||| |||||||||||||||||||||| || ||||||| | |||||||| |||||||||||||||     |||||||  ||||||||||    
T  54122275 atttatgatagtggagaatgcaccaatacttaacaaaaacatttaaaactatttttctctctccttcatttatacatttgtcttaatatgtgtgaaatga 54122176  T
Q  364 gcaaatgactaagtgaatttaggactgagggagtatt 400  Q
      ||||| || ||  |||| ||||| |||||||||||    
T  54122175 aaaaatggctcagctaattcaggacagagggagtatt 54122139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 39866604 - 39866529
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    ||||||| || |||| ||| |||||||||||||||||| |||||||||| | |||||||| |||||||||||||||    
T  39866604 atttatgatagtggagaatacaccaatacttaacaaaatcacttaaaactatttttctctttccttcatttataca 39866529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 2868641 - 2868739
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttataca-----cttaataaatgtgaaatgagcaaatgact 373  Q
    |||| |||||| |||||| ||||||||| ||||||||| ||||| |||| |||||||||||||||     |||||||  ||||||||||||||||||||    
T  2868641 tggagaatgcagcaatacataacaaaagaacttaaaaccatttttctctctccttcatttatacatttttcttaatatgtgtgaaatgagcaaatgact 2868739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 376
Target Start/End: Original strand, 10855061 - 10855162
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca-----cttaataaatgtgaaatgagcaaatgacta 374  Q
    |||| ||||||||||||| ||| |||| |||||||||| | |||||||| |||||||||||||||     |||||||  |||||||||| ||||||||||    
T  10855061 tggataatgcaccaatacataataaaaacacttaaaactatttttctctctccttcatttatacatttatcttaatacgtgtgaaatgatcaaatgacta 10855160  T
Q  375 ag 376  Q
    ||    
T  10855161 ag 10855162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 5245467 - 5245543
Alignment:
Q  269 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    |||||||| || |||| ||| |||||||||||||||| |||||||||||| | |||||||| |||||||| ||||||    
T  5245467 tatttatgatattggagaatacaccaatacttaacaagagcacttaaaactatttttctctctccttcatgtataca 5245543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 41031605 - 41031685
Alignment:
Q  244 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 324  Q
    ||||||||||||||||| ||||   |  ||||| || |||||||||||||||||||||||||  ||||||||||| |||||    
T  41031605 caattcaatatatttcactttacatttattatgatagtggaaaatgcaccaatacttaacaagtgcacttaaaactatttt 41031685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 11251178 - 11251103
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| |||||||||||||||||||| ||||||||||| || |||| ||| || ||||||||||||    
T  11251178 atttatgatagtggagaatgcaccaatacttaacaagagcacttaaaatcatttttttctctcattcatttataca 11251103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 21296554 - 21296479
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || || |||||||||||||||||||||| |||| |||||| || ||| |||| |||||||||||||||    
T  21296554 atttatgatagtgaaaaatgcaccaatacttaacaagagcatttaaaatcattttcctctctccttcatttataca 21296479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 26134730 - 26134679
Alignment:
Q  294 aatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttataca 344  Q
    |||||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  26134730 aatacttaacaagagcacttaaaacaatttttctctctccttcatttataca 26134679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 33994713 - 33994788
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| ||||||||||||||||||||  ||||||||||  | |||||||| |||||||||||||||    
T  33994713 atttatgatagtggagaatgcaccaatacttaacaagtgcacttaaaattatttttctctctccttcatttataca 33994788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 398
Target Start/End: Complemental strand, 17777045 - 17776911
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| || |||| ||||||| ||||||||| |||||||| |||||| ||||| |||| || ||||||||||||      ||||||  ||||||||||    
T  17777045 atttatggtagtggagaatgcacaaatacttaaaaaaagcacctaaaaccatttttctctctcattcatttatacattttttttaatacgtgtgaaatga 17776946  T
Q  364 gcaaatgactaagtgaatttaggactgagggagta 398  Q
    |||||||||| ||| ||| | |||| |||| ||||    
T  17776945 gcaaatgactcagttaatctgggacggaggaagta 17776911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 398
Target Start/End: Complemental strand, 19078346 - 19078212
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| || |||| ||||||| ||||||||| |||||||| |||||| ||||| |||| || ||||||||||||      ||||||  ||||||||||    
T  19078346 atttatggtagtggagaatgcacaaatacttaaaaaaagcacctaaaaccatttttctctctcattcatttatacattttttttaatacgtgtgaaatga 19078247  T
Q  364 gcaaatgactaagtgaatttaggactgagggagta 398  Q
    |||||||||| ||| ||| | |||| |||| ||||    
T  19078246 gcaaatgactcagttaatctgggacggaggaagta 19078212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 344
Target Start/End: Complemental strand, 32023141 - 32023076
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaac--aattttctctatccttcatttataca 344  Q
    |||| ||||||||||||||||||||||| |||||||||  | |||||| | |||||||||||||||    
T  32023141 tggagaatgcaccaatacttaacaaaagtacttaaaacttatttttctatctccttcatttataca 32023076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 344
Target Start/End: Complemental strand, 32827377 - 32827280
Alignment:
Q  245 aattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatac 343  Q
    |||||||||||||||| ||||    ||||||| || |||| ||||||||||||| ||||||  ||||||||||| | |||| ||| ||||||||||||||    
T  32827377 aattcaatatatttcactttac---atttatgatagtggagaatgcaccaatacgtaacaagtgcacttaaaactatttttttctctccttcatttatac 32827281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 397
Target Start/End: Complemental strand, 14756165 - 14756032
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| || |||| |||| |||| |||||||||| |||||||||||  ||||| |||| ||||| | |||||||     |||||||  ||| ||||||    
T  14756165 atttatgatagtggagaatgtaccagtacttaacaagagcacttaaaattatttttctctctcctttaattatacatttttcttaatatgtgtaaaatga 14756066  T
Q  364 gcaaatgactaagtgaatttaggactgagggagt 397  Q
    |||||||||| ||| ||| |||||| ||||||||    
T  14756065 gcaaatgactcagttaatctaggacagagggagt 14756032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 400
Target Start/End: Complemental strand, 39365071 - 39364952
Alignment:
Q  288 tgcaccaatacttaacaaaagcacttaaaacaa--ttttctctatccttcatttataca-----cttaataaatgtgaaatgagcaaatgactaagtgaa 380  Q
    |||||||||||||||||| |||||||||||| |  |||||||| ||||| |||||||||     |||||||  |||||||||||||| || || ||  ||    
T  39365071 tgcaccaatacttaacaagagcacttaaaaccactttttctctctcctttatttatacatttttcttaatatgtgtgaaatgagcaagtggctcagctaa 39364972  T
Q  381 tttaggactgagggagtatt 400  Q
    ||  |||| |||||||||||    
T  39364971 ttcgggacggagggagtatt 39364952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 54458384 - 54458313
Alignment:
Q  243 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa 317  Q
    ||||||||||||||| || ||||    ||||||| ||||||| |||||||| ||||||||||||| |||||||||    
T  54458384 tcaattcaatatattccactttac---atttatgataatggagaatgcacccatacttaacaaaatcacttaaaa 54458313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 36097695 - 36097632
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatac 343  Q
    |||| |||||||| ||||||||||| || |||||||| || |||||||| ||||||||||||||    
T  36097695 tggagaatgcaccgatacttaacaagagtacttaaaaccatttttctctctccttcatttatac 36097632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 340
Target Start/End: Original strand, 17342860 - 17342955
Alignment:
Q  243 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcattta 340  Q
    |||||||||||||||||| ||| |   ||||||| ||||||| |||||||||||||||||||||| ||||||||| || ||||| || |||||||||||    
T  17342860 tcaattcaatatatttcactttgt---atttatgataatggagaatgcaccaatacttaacaaaaacacttaaaaccatttttccctctccttcattta 17342955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 344
Target Start/End: Original strand, 32587797 - 32587896
Alignment:
Q  243 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttat 341  Q
    |||||||||||||||||| |||     ||||||| |||||||||||||| ||||||||||||||| |||||||||  | ||||||||  |||||||||||    
T  32587797 tcaattcaatatatttcactttgc---atttatgataatggaaaatgcatcaatacttaacaaaaacacttaaaattatttttctctcaccttcatttat 32587893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 26756005 - 26756107
Alignment:
Q  240 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatt 338  Q
    |||||||||||||||||| || |||||   ||||||| || |||| |||||| |||||||||||||  ||||||||||| ||||| |||| || ||||||    
T  26756005 ttttcaattcaatatattacactttat---atttatgatagtggagaatgcatcaatacttaacaagtgcacttaaaactattttcctctctcattcatt 26756101  T
Q  339 tataca 344  Q
    ||||||    
T  26756102 tataca 26756107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 399
Target Start/End: Original strand, 49945004 - 49945123
Alignment:
Q  286 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca-----cttaataaatgtgaaatgagcaaatgactaagtga 379  Q
    ||||||| |||||||||||| ||||||||||| || |||||||| | |||||||||||||     |||||||  |||||||||||||||||||| ||| |    
T  49945004 aatgcacaaatacttaacaagagcacttaaaaccatttttctctcttcttcatttatacatttttcttaatatgtgtgaaatgagcaaatgacttagtta 49945103  T
Q  380 atttaggactgagggagtat 399  Q
    ||  ||||| ||| ||||||    
T  49945104 atccaggacagagagagtat 49945123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 50267513 - 50267415
Alignment:
Q  244 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 342  Q
    ||||||||||||||||| ||||    ||||||| ||||||| ||||||||||||||||||||  ||||||||||| | ||||||||  | ||||||||||    
T  50267513 caattcaatatatttcactttac---atttatgataatggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctcactttcatttata 50267417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 52830466 - 52830391
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||||||||||||||||||||||||| ||||| ||||  | |||||||| |||||||||||||||    
T  52830466 atttatgatagtggaaaatgcaccaatacttaacaaatgcactcaaaattatttttctctctccttcatttataca 52830391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 28277117 - 28277036
Alignment:
Q  240 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 324  Q
    ||||||||||||||||||||| ||||    ||||||| || |||| ||||||||||||||||||||  ||||||||||| |||||    
T  28277117 ttttcaattcaatatatttcactttac---atttatgatactggagaatgcaccaatacttaacaagtgcacttaaaactatttt 28277036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 32348285 - 32348349
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||||  ||||||||||||||| ||||||||||| || |||||||| |||||||||||||||    
T  32348285 tggaaaatagaccaatacttaacaagagcacttaaaaccatttttctctctccttcatttataca 32348349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 3555607 - 3555532
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| |||  |||||||||||| |||||||||||||| || ||||| ||||||||||||||||||    
T  3555607 atttatgatagtggagaatagaccaatacttaaaaaaagcacttaaaaccatttttccctatccttcatttataca 3555532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 13500909 - 13500862
Alignment:
Q  196 ttttgtaaaaaattattgttttaaaataacttatccatttcacttttt 243  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||    
T  13500909 ttttgtaaaaaaatattgtcctaaaataacttatccatttcacttttt 13500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 42926190 - 42926265
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| |||||||| ||||||||||||| ||||||||| || |||||||| || ||||||||||||    
T  42926190 atttatgatagtggagaatgcaccgatacttaacaaaaacacttaaaatcatttttctctttcattcatttataca 42926265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 51749235 - 51749160
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| ||||||| |||  ||||||||||||||| | ||||||||| || |||||||| |||||||||||||||    
T  51749235 atttatgataatggagaataaaccaatacttaacaagaacacttaaaatcagttttctctctccttcatttataca 51749160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 342
Target Start/End: Complemental strand, 19532991 - 19532898
Alignment:
Q  247 ttcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 342  Q
    |||||||||||||| ||||    ||||||| || |||| |||| |||||||||||||||   |||||||||| | ||||||||||||||||||||||    
T  19532991 ttcaatatatttcactttac---atttatgatagtggagaatgaaccaatacttaacaagtacacttaaaactatttttctctatccttcatttata 19532898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 21304862 - 21304784
Alignment:
Q  266 ttatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttataca 344  Q
    ||||||||||| ||| | |||||||| |||||||| |||||  |||| ||||||||||| ||| || ||||||||||||    
T  21304862 ttatatttatgataaagaaaaatgcatcaatacttgacaaagacactcaaaacaattttatctctctttcatttataca 21304784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 17724766 - 17724697
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatt 338  Q
    ||||||| || |||| |||||| ||||| ||||||| |||||||||||||| |||||||| |||||||||    
T  17724766 atttatggtagtggagaatgcatcaataattaacaagagcacttaaaacaatttttctctctccttcatt 17724697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 368
Target Start/End: Original strand, 34813973 - 34814077
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| |||||  |||||||| |||||||||||| | |||||||||| | |||||||| ||||||| | |||||     |||||||| ||||||||||    
T  34813973 atttatgataatgataaatgcactaatacttaacaagaacacttaaaactatttttctctctccttcactaatacatttttcttaataagtgtgaaatga 34814072  T
Q  364 gcaaa 368  Q
    |||||    
T  34814073 gcaaa 34814077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 8773309 - 8773352
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 324  Q
    |||| |||||||||||||||||||| |||||||||||| |||||    
T  8773309 tggagaatgcaccaatacttaacaagagcacttaaaactatttt 8773352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 27391403 - 27391478
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| |||| | ||||| |||||||||||| || ||||||||||| || |||||||| ||||||| |||||||    
T  27391403 atttatgataatagtaaatgaaccaatacttaataagagcacttaaaatcatttttctctctccttcacttataca 27391478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 28839395 - 28839470
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    ||||||| || |||| |||  ||||||||||||||| |||| ||||||| | |||||||| |||||||||||||||    
T  28839395 atttatgatagtggagaatagaccaatacttaacaagagcatttaaaactatttttctctctccttcatttataca 28839470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 36467270 - 36467172
Alignment:
Q  244 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 342  Q
    ||||||||||||||||| ||||    ||||||  || |||| ||| ||||||||||||||||  ||||||||||| | |||||||| || ||||||||||    
T  36467270 caattcaatatatttcactttac---atttatcatagtggagaatccaccaatacttaacaagtgcacttaaaactatttttctctctcattcatttata 36467174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 52432384 - 52432443
Alignment:
Q  286 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    |||||| ||||||||||||| ||||||||||| || |||||||| | |||||||||||||    
T  52432384 aatgcatcaatacttaacaagagcacttaaaatcatttttctctcttcttcatttataca 52432443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 2571435 - 2571492
Alignment:
Q  286 aatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttataca 344  Q
    |||||||||||||||||||| | |||| ||||| ||||||||| || ||||||||||||    
T  2571435 aatgcaccaatacttaacaaga-cactcaaaactattttctctctctttcatttataca 2571492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 398
Target Start/End: Original strand, 16040149 - 16040267
Alignment:
Q  286 aatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttataca-----cttaataaatgtgaaatgagcaaatgactaagtga 379  Q
    |||| ||||||||||||||||  |||||||||| ||||| |||| ||||| | | ||| |     ||||||||||||||||||||||||||||| | | |    
T  16040149 aatgaaccaatacttaacaaagacacttaaaaccatttttctctctccttgactaatatatttttcttaataaatgtgaaatgagcaaatgactcaatta 16040248  T
Q  380 atttaggactgagggagta 398  Q
    | || |||| |||||||||    
T  16040249 aatttggacggagggagta 16040267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 34877142 - 34877088
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 324  Q
    ||||||| |||| |||||||||| |||| ||||| | ||||||||||||||||||    
T  34877142 atttatgataatagaaaatgcacgaatatttaaccagagcacttaaaacaatttt 34877088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 43895923 - 43895977
Alignment:
Q  290 caccaatacttaacaaaagcacttaaaacaattttctctatccttcatttataca 344  Q
    |||||||||||||||||| ||| |||||| ||||||||| || ||||| ||||||    
T  43895923 caccaatacttaacaaaaacacataaaactattttctctctctttcatctataca 43895977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 10370213 - 10370161
Alignment:
Q  294 aatacttaacaaaagcacttaaaacaa--ttttctctatccttcatttataca 344  Q
    ||||||||||||||||||||||||| |  |||||||| ||||| |||||||||    
T  10370213 aatacttaacaaaagcacttaaaactattttttctctctcctttatttataca 10370161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 40019116 - 40019059
Alignment:
Q  266 ttatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattt 323  Q
    ||||||||||| |||||  ||||||||||||| |||||||||  | ||||||||||||    
T  40019116 ttatatttatgataatgttaaatgcaccaatatttaacaaaaagatttaaaacaattt 40019059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 45889300 - 45889224
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatcc-ttcatttataca 344  Q
    ||||||| ||||||| |||  ||||||| ||||||| ||||||||||| || |||||||| ||| ||||||||||||    
T  45889300 atttatgataatggagaatagaccaatagttaacaagagcacttaaaaccatttttctctctcctttcatttataca 45889224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 28572264 - 28572338
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttataca 344  Q
    ||||||| || |||| |||||||||||||||||||| |||||||||||  ||||||||| ||||| |||||||||    
T  28572264 atttatgatagtggagaatgcaccaatacttaacaagagcacttaaaatcattttctctctcctttatttataca 28572338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 344
Target Start/End: Original strand, 23684991 - 23685090
Alignment:
Q  243 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttat 341  Q
    |||||||||||||||||| |||     ||||||| || |||| ||||||| |||||||||||||| |||||||||| |||||||||| ||||| ||||||    
T  23684991 tcaattcaatatatttcactttgc---atttatgatagtggagaatgcactaatacttaacaaaaacacttaaaactaattttctctctcctttatttat 23685087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 30757642 - 30757544
Alignment:
Q  244 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 342  Q
    |||||||||||||| |||||||    ||||||| || |||||||||||  ||||||||||||  ||||||||||| | |||||||| |||||||||||||    
T  30757642 caattcaatatattccaatttac---atttatgatagtggaaaatgcattaatacttaacaagtgcacttaaaactatttttctctctccttcatttata 30757546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 401
Target Start/End: Original strand, 28301466 - 28301627
Alignment:
Q  243 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttat 341  Q
    |||||||||||||||||| |||     ||||||| || |||| |||  ||||||||||||||| ||||||||||| || |||||||| ||||||||||||    
T  28301466 tcaattcaatatatttcactttgc---atttatgatagtggagaatagaccaatacttaacaagagcacttaaaaccatttttctctttccttcatttat 28301562  T
Q  342 aca-----cttaataaatgtgaaatgagcaaatgactaagtgaatttaggactgagggagtatta 401  Q
    |||     ||||||| ||||||  |||||||||| || ||| |||   |||| ||||||||||||    
T  28301563 acatttgtcttaatatatgtgatttgagcaaatggcttagttaatccgggacggagggagtatta 28301627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 400
Target Start/End: Original strand, 28527036 - 28527156
Alignment:
Q  286 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca-----cttaataaatgtgaaatgagcaaatgactaagtga 379  Q
    ||||||| |||||||||||| ||||||||||| || |||| | | |||||||||||||||     |||||||  |||||||||||||||||||| ||| |    
T  28527036 aatgcacgaatacttaacaagagcacttaaaaccatttttttttctccttcatttatacatttttcttaatatgtgtgaaatgagcaaatgactcagtta 28527135  T
Q  380 atttaggactgagggagtatt 400  Q
    |||  |||| || ||||||||    
T  28527136 attcgggacggatggagtatt 28527156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 2882041 - 2882116
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| |||||||||||||||||||| ||||||||||| || |||||| | || ||||||||||||    
T  2882041 atttatgatagtggagaatgcaccaatacttaacaagagcacttaaaatcatttttctatctctttcatttataca 2882116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 344
Target Start/End: Complemental strand, 24775886 - 24775784
Alignment:
Q  240 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatt 338  Q
    |||| |||||||||||||||| ||||    ||||||| || |||| ||| ||||||||||||||||  ||||||||||  | |||||||| |||||||||    
T  24775886 tttttaattcaatatatttcactttac---atttatgatagtggagaatacaccaatacttaacaagtgcacttaaaattatttttctctctccttcatt 24775790  T
Q  339 tataca 344  Q
    ||||||    
T  24775789 tataca 24775784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 15859385 - 15859323
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 342  Q
    |||| ||||| ||||||||||||||||| ||||||||| | |||||||| |||||||||||||    
T  15859385 tggagaatgccccaatacttaacaaaagtacttaaaactatttttctctctccttcatttata 15859323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 18181264 - 18181210
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 324  Q
    ||||||| || |||| ||||||||||||| ||||||||||||||||||| |||||    
T  18181264 atttatgatagtggagaatgcaccaatacataacaaaagcacttaaaaccatttt 18181210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 28108415 - 28108353
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 342  Q
    |||| ||||||||||||||||||||  ||||||||||| | |||||||| |||||||||||||    
T  28108415 tggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctctccttcatttata 28108353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 3100456 - 3100529
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttata 342  Q
    ||||||| || |||| |||||| ||||||||||||| | ||||||||| || |||||||| |||||||||||||    
T  3100456 atttatgatagtggagaatgcagcaatacttaacaagatcacttaaaatcatttttctctctccttcatttata 3100529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 373
Target Start/End: Complemental strand, 43950499 - 43950390
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| ||||||||||| || ||||||||||||||| || ||||||| | |||||||| || |||| |||||||      ||||||| ||||||||||    
T  43950499 atttatgttaatggaaaatacatcaatacttaacaaaaacatttaaaactatttttctctctctttcacttatacattttttttaataagtgtgaaatga 43950400  T
Q  364 gcaaatgact 373  Q
    | ||||||||    
T  43950399 gtaaatgact 43950390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 400
Target Start/End: Original strand, 9724950 - 9725070
Alignment:
Q  286 aatgcaccaatacttaacaaaagcacttaaaacaattt-tctctatccttcatttatacactt-----aataaatgtgaaatgagcaaatgactaagtga 379  Q
    ||||||||||||||| | ||||||||| ||||  |||| ||||| || |||||||||||||||     ||||  ||||||||||| |||||||| | | |    
T  9724950 aatgcaccaatacttgataaaagcactcaaaatcatttctctctctctttcatttatacacttttcttaatatgtgtgaaatgagaaaatgactcaatta 9725049  T
Q  380 atttaggactgagggagtatt 400  Q
    | ||||||| |||||||||||    
T  9725050 aattaggacggagggagtatt 9725070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 36155580 - 36155644
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    |||| ||| |||||||||||||||| ||||||||||| || |||| ||| |||||||||||||||    
T  36155580 tggagaatacaccaatacttaacaagagcacttaaaatcatttttttctctccttcatttataca 36155644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 40965093 - 40965145
Alignment:
Q  293 caatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    |||||||||||||| ||||||||||| | |||||||| |||||||||||||||    
T  40965093 caatacttaacaaatgcacttaaaactatttttctctctccttcatttataca 40965145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 565145 - 565220
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| |||||||||||||||||||| | ||||||||| || |||||| | |||||||| ||||||    
T  565145 atttatgatagtggagaatgcaccaatacttaacaagaacacttaaaatcatttttctttctccttcatatataca 565220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 2756730 - 2756805
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttataca 344  Q
    ||||||| |||||| |||||||| ||||||| |||| ||||||||||| || |||||||| | ||||||| |||||    
T  2756730 atttatgataatggtaaatgcactaatacttgacaagagcacttaaaataatttttctctcttcttcattaataca 2756805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 28925922 - 28925824
Alignment:
Q  244 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 342  Q
    ||||||||||||||||| ||||  ||   |||| || |||| |||||| |||||||||||||  ||||||||||| | |||||||| ||||| |||||||    
T  28925922 caattcaatatatttcactttacaat---tatgatagtggagaatgcatcaatacttaacaagtgcacttaaaactatttttctctctcctttatttata 28925826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 344
Target Start/End: Complemental strand, 43077804 - 43077702
Alignment:
Q  240 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatt 338  Q
    ||||||||||||||||||||| |   ||| |||||||  | ||||||||||||||||| |||||||   || ||||||| | |||||||| || ||||||    
T  43077804 ttttcaattcaatatatttcact---ttacatttatgacagtggaaaatgcaccaatagttaacaagtacatttaaaactatttttctctctcattcatt 43077708  T
Q  339 tataca 344  Q
    ||||||    
T  43077707 tataca 43077702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 7650026 - 7649952
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttataca 344  Q
    ||||||| || |||| |||||| || |||||||||| ||||||||||| | ||| | || |||||||||||||||    
T  7650026 atttatgatagtggagaatgcatcagtacttaacaagagcacttaaaatattttgcgctctccttcatttataca 7649952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 33755334 - 33755388
Alignment:
Q  291 accaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||||||||||| | ||||||||| || |||||||| |||||||||||||||    
T  33755334 accaatacttaacaataacacttaaaatcatttttctctctccttcatttataca 33755388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 5007759 - 5007686
Alignment:
Q  161 atttgctactcattccgtcctttaataaatgatcattttgtaaaaaattattgttttaaaataacttatccatt 234  Q
    ||||| |||||  |||||||| |||||| |||||||||||||||||| |||| |  |||||||||  |||||||    
T  5007759 atttgttactccctccgtcctataataagtgatcattttgtaaaaaaatattatcctaaaataaccgatccatt 5007686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 344
Target Start/End: Complemental strand, 435153 - 435054
Alignment:
Q  243 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttat 341  Q
    |||||||||||||||||| ||||    ||||||| || |||| ||||||| |||| |||||||  ||||||||||| | |||| ||| || |||||||||    
T  435153 tcaattcaatatatttcactttac---atttatgatagtggagaatgcactaatatttaacaagtgcacttaaaactatttttgtctctctttcatttat 435057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 13375240 - 13375164
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatac-ttaacaaaagcacttaaaacaattt-tctctatccttcatttataca 344  Q
    ||||||| || |||| ||||||||||||| |||||||  ||||||||||  |||| ||||| |||||||||||||||    
T  13375240 atttatgatagtggagaatgcaccaataccttaacaactgcacttaaaattatttatctctctccttcatttataca 13375164  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 344
Target Start/End: Complemental strand, 11099530 - 11099454
Alignment:
Q  269 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    |||||||| || |||| |||||||||||||||||||||| |||||||||| | |||||||| || ||||||||||||    
T  11099530 tatttatgatagtggagaatgcaccaatacttaacaaaaacacttaaaactatttttctctctctttcatttataca 11099454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 3725242 - 3725317
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| |||||||||||||||||||| ||||||||||| || |||||||| |||||| ||||||||    
T  3725242 atttatgatagtggagaatgcaccaatacttaacaatagcacttaaaaccatttttctctctccttcctttataca 3725317  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 7613740 - 7613838
Alignment:
Q  244 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 342  Q
    ||||||||||||||||| ||||    ||||||| || |||| ||||||||||||||||||||  ||||||||||| | |||||||| ||||| |||||||    
T  7613740 caattcaatatatttcactttac---atttatgatagtggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctttccttaatttata 7613836  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 25814397 - 25814492
Alignment:
Q  244 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttat 341  Q
    ||||||||||||||||| ||||    ||||||| || |||| |||| |||||||||||||||  ||||||||||| | |||||||| ||||||||||||    
T  25814397 caattcaatatatttcactttac---atttatgatagtggataatgtaccaatacttaacaagtgcacttaaaactatttttctctctccttcatttat 25814492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 35666940 - 35667039
Alignment:
Q  269 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    |||||||  |||||| |||||||||||||||||| ||||||||||||||| ||||| ||| ||||||| | ||| |     |||||||||||||||||||    
T  35666940 tatttataataatggtaaatgcaccaatacttaagaaaagcacttaaaactatttt-tctctccttcaataataaatttttcttaataaatgtgaaatga 35667038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 39008199 - 39008263
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    |||| |||| ||||||||||||||| ||||||||||| || |||||||| |||||||||||||||    
T  39008199 tggagaatgaaccaatacttaacaagagcacttaaaaccatttttctctctccttcatttataca 39008263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 33988256 - 33988331
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| ||| |||||||||||||||||| ||||||||| || |||||| | |||||||||||||||    
T  33988256 atttatgatagtggagaatacaccaatacttaacaaaaacacttaaaaccatttttctttctccttcatttataca 33988331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 344
Target Start/End: Original strand, 6610871 - 6610968
Alignment:
Q  245 aattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaa-acaattttctctatccttcatttatac 343  Q
    |||||||||||||||| ||||    ||||||| || |||| ||||||||||||||||| |||| ||||||||  || |||||||| ||||||||| ||||    
T  6610871 aattcaatatatttcactttac---atttatgatagtggagaatgcaccaatacttaataaaaacacttaaactcatttttctctctccttcattgatac 6610967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 8369748 - 8369694
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 324  Q
    ||||||| || |||| |||||||||||||||||||| |||| |||||||||||||    
T  8369748 atttatgatagtggagaatgcaccaatacttaacaagagcatttaaaacaatttt 8369694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 15814709 - 15814807
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttataca-----cttaataaatgtgaaatgagcaaatgact 373  Q
    |||||||| ||| |||||||||||| ||| ||||||| || |||||||| |||||||||||||||      |||||| ||||||||| |||||||||||    
T  15814709 tggaaaatacacaaatacttaacaagagcgcttaaaataatttttctctctccttcatttatacattttttttaatatatgtgaaataagcaaatgact 15814807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 8692870 - 8692797
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttata 342  Q
    ||||||| || |||| |||||||||||||||||||| | ||||||||| || |||||||  |||||||||||||    
T  8692870 atttatgatagtggagaatgcaccaatacttaacaagaacacttaaaaccatttttctccctccttcatttata 8692797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 12678268 - 12678345
Alignment:
Q  167 tactcattccgtcctttaataaatgatcattttgtaaaaaat-tattgttttaaaataacttatccatttcacttttt 243  Q
    |||||| ||||||||||||||| ||||  |||||| |||||| ||||||  |||||||||| ||| ||||||||||||    
T  12678268 tactcaatccgtcctttaataagtgattgttttgttaaaaatatattgtcctaaaataactgatctatttcacttttt 12678345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 35646141 - 35646068
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttata 342  Q
    ||||||| || |||| |||||||||||||||||||| | ||||||||| || |||||||| || ||||||||||    
T  35646141 atttatgatagtggagaatgcaccaatacttaacaagatcacttaaaatcatttttctctctcattcatttata 35646068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 20189924 - 20190002
Alignment:
Q  243 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 324  Q
    ||||||||||||||| || ||||    ||||||| ||||||| |||||| || ||||||||||| ||||||||||| |||||    
T  20189924 tcaattcaatatattccactttac---atttatgataatggagaatgcatcagtacttaacaaatgcacttaaaactatttt 20190002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 41184732 - 41184791
Alignment:
Q  286 aatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca 344  Q
    ||||||||||||||||||||  ||||||||||| | |||||| | |||||||||||||||    
T  41184732 aatgcaccaatacttaacaagtgcacttaaaactatttttctttctccttcatttataca 41184791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 42575690 - 42575615
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    ||||||| || |||| ||| |||||||||||| ||| ||||||||||| || |||||||| || ||||||||||||    
T  42575690 atttatgatagtggagaatacaccaatacttaccaagagcacttaaaaccatttttctctctcattcatttataca 42575615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 373
Target Start/End: Original strand, 858391 - 858500
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttct-ctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| ||||||| |||| ||||||| ||||||| |  ||||||||| ||||| | || ||||| |||||||||     |||||||  ||||||||||    
T  858391 atttatgataatggagaatgtaccaatatttaacaagataacttaaaaccatttttttctctcctttatttatacatttttcttaatatgtgtgaaatga 858490  T
Q  364 gcaaatgact 373  Q
    ||||||||||    
T  858491 gcaaatgact 858500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 17741205 - 17741145
Alignment:
Q  286 aatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacactt 347  Q
    |||||| |||||||||||||| ||||| ||||| ||||| ||| || |||||||||||||||    
T  17741205 aatgcatcaatacttaacaaaggcactcaaaactatttt-tctctctttcatttatacactt 17741145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 373
Target Start/End: Complemental strand, 36469146 - 36469037
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcactta-aaacaattttctctatccttcatttataca-----cttaataaatgtgaaatga 363  Q
    ||||||| || |||| ||||||||||||| |||||||| |||||| || || |||| | | |||||||||||||||     |||||||  ||||||||||    
T  36469146 atttatgatagtggagaatgcaccaatacataacaaaaacacttataatcatttttttatctccttcatttatacatttttcttaatatgtgtgaaatga 36469047  T
Q  364 gcaaatgact 373  Q
    |||| |||||    
T  36469046 gcaactgact 36469037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 31956640 - 31956700
Alignment:
Q  183 taataaatgatcattttgtaaaaaattattgttttaaaataacttatccatttcacttttt 243  Q
    |||||| ||||| |||||| ||||| ||||||| |||||||| | ||| ||||||||||||    
T  31956640 taataagtgatctttttgtcaaaaaatattgttctaaaataattgatctatttcacttttt 31956700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 32539718 - 32539766
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac 318  Q
    ||||||| || |||| ||||||||||||| ||| |||||||||||||||    
T  32539718 atttatgatagtggagaatgcaccaatacataataaaagcacttaaaac 32539766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 9603 - 9529
Alignment:
Q  270 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatac 343  Q
    ||||||| ||||||| ||| ||  |||||||||||| ||||||||||| || |||||||| ||||||||||||||    
T  9603 atttatgataatggagaatacattaatacttaacaagagcacttaaaaccatttttctctctccttcatttatac 9529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 98892 - 98956
Alignment:
Q  281 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 344  Q
    |||| |||||||||||||||| ||| ||||||||||| || |||||||| || ||||||||||||    
T  98892 tggataatgcaccaatacttatcaagagcacttaaaatcatttttctctctcattcatttataca 98956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 3919 - 3992
Alignment:
Q  161 atttgctactcattccgtcctttaataaatgatcattttgtaaaaaattattgttttaaaataacttatccatt 234  Q
    ||||| |||||  |||||||| |||||| |||||||||||||||||| |||| |  |||||||||  |||||||    
T  3919 atttgttactccctccgtcctataataagtgatcattttgtaaaaaaatattatcctaaaataaccgatccatt 3992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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