View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_low_14 (Length: 412)
Name: NF19176_low_14
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 127 - 358
Target Start/End: Original strand, 44265018 - 44265249
Alignment:
| Q |
127 |
gtgttcaacttacttataagtaaaatcaactcattagatttcaatatttttcaccaccgagccaaagatgcactcgattgatacaaatagccacatacac |
226 |
Q |
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| T |
44265018 |
gtgttcaacttacttataagtaaaatcaactcattagatttcaatatttttcaccaccgaaccaaagatgcactcgattgatacaaatagccacatacac |
44265117 |
T |
|
| Q |
227 |
atgtaatatacaagcttttatttttccaaattaactttcttacaagtatgcaaaatgaaaaagcactcacttagattttccattacttatagttcaagta |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44265118 |
atgtaatatacaagcttttatttttccaaattaactttcttgcaagtatgcaaaatgaaaaagcactcacttagattttccattacttatagtacaagta |
44265217 |
T |
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| Q |
327 |
aggaacattattacattctggtaaaactaacc |
358 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44265218 |
aggaacattattacattctggtaaaactaacc |
44265249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 391
Target Start/End: Complemental strand, 48844017 - 48843989
Alignment:
| Q |
363 |
catttcacatgggaaagttggattcaatg |
391 |
Q |
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| T |
48844017 |
catttcacatgggaaagttggattcaatg |
48843989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 391
Target Start/End: Complemental strand, 4374356 - 4374328
Alignment:
| Q |
363 |
catttcacatgggaaagttggattcaatg |
391 |
Q |
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| T |
4374356 |
catttcacatgggaaagttggattcaatg |
4374328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 391
Target Start/End: Original strand, 3739031 - 3739059
Alignment:
| Q |
363 |
catttcacatgggaaagttggattcaatg |
391 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3739031 |
catttcacatgggaaagttggattcaatg |
3739059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 391
Target Start/End: Complemental strand, 42408624 - 42408592
Alignment:
| Q |
359 |
gtgacatttcacatgggaaagttggattcaatg |
391 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
42408624 |
gtgacatttcacatggaaaagttggattcaatg |
42408592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 391
Target Start/End: Complemental strand, 43658950 - 43658922
Alignment:
| Q |
363 |
catttcacatgggaaagttggattcaatg |
391 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43658950 |
catttcacatgggaaagttggattcaatg |
43658922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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