View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19176_low_16 (Length: 408)

Name: NF19176_low_16
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19176_low_16
NF19176_low_16
[»] chr3 (2 HSPs)
chr3 (11-259)||(43417546-43417794)
chr3 (285-391)||(43417821-43417927)
[»] chr5 (3 HSPs)
chr5 (176-259)||(1723955-1724038)
chr5 (204-242)||(1743810-1743848)
chr5 (178-246)||(1743597-1743664)
[»] chr2 (3 HSPs)
chr2 (188-259)||(18644305-18644376)
chr2 (204-256)||(43756139-43756191)
chr2 (203-246)||(42480576-42480619)
[»] chr7 (1 HSPs)
chr7 (190-257)||(47607809-47607876)
[»] chr4 (4 HSPs)
chr4 (176-251)||(32532088-32532162)
chr4 (163-209)||(5586179-5586225)
chr4 (178-247)||(46119946-46120015)
chr4 (178-247)||(46133080-46133149)
[»] chr1 (1 HSPs)
chr1 (195-244)||(14153905-14153954)
[»] scaffold0001 (2 HSPs)
scaffold0001 (225-259)||(15146-15180)
scaffold0001 (225-259)||(18128-18162)
[»] chr6 (1 HSPs)
chr6 (173-243)||(32239958-32240028)
[»] chr8 (1 HSPs)
chr8 (210-246)||(3816475-3816511)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 43417546 - 43417794
Alignment:
Q  11 cagagacacctctccaagaatgtcatgtcatgttttggacaatacatgcatcttaaacaaccatgcttatttggacacgtcttgaatatacttatatatg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43417546 cagagacacctctccaagaatgtcatgtcatgttttggacaatacatgcatattaaacaaccatgcttatttggacacgtcttgaatatacttatatatg 43417645  T
Q  111 tgttggaaataatatttctagatgtctttgatagattataagaaaatcatttatatttgaaattatgtttaaaatagttttagaatttatttcttattta 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43417646 tgttggaaataatatttctagatgtctttgatagattataagaaaatcatttatatttgaaattatgtttaaaatatttttagaatttatttcttattta 43417745  T
Q  211 aagatatgatttagaaatatgttttgtattacaatttagctctatatat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43417746 aagatatgatttagaaatatgttttgtattacaatttagctctatatat 43417794  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 285 - 391
Target Start/End: Original strand, 43417821 - 43417927
Alignment:
Q  285 gaagttttccacatatcctctcatatatttccacaacttcaaatacaaactaaggctatgcaacaaaagaaaaagaggtggagcttccctggatggaagc 384  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43417821 gaagttttccacatatcctctcatatatttccacaacttcaaacacaaactaaggctatgcaacaaaagaaaaagaggtggagcttccctggatggaagc 43417920  T
Q  385 aagcagc 391  Q
    |||||||    
T  43417921 aagcagc 43417927  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 1723955 - 1724038
Alignment:
Q  176 tgtttaaaatagttttagaatttatttcttatttaaagatatgatttagaaatatgttttgtattacaatttagctctatatat 259  Q
    |||| |||||| ||||| ||||| ||| ||||||||| ||||| ||||||||||||||||| ||||||||||  ||||||||||    
T  1723955 tgttcaaaatatttttaaaatttgttttttatttaaatatatgttttagaaatatgttttgcattacaatttttctctatatat 1724038  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 1743848 - 1743810
Alignment:
Q  204 ttatttaaagatatgatttagaaatatgttttgtattac 242  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  1743848 ttatttaaatatatgttttagaaatatgttttgtattac 1743810  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 1743664 - 1743597
Alignment:
Q  178 tttaaaatagttttagaatttatttcttatttaaagatatgatttagaaatatgttttgtattacaatt 246  Q
    |||| |||| |||||| |||| ||| ||||||||| | ||| ||||||||||| |||||||||||||||    
T  1743664 tttagaatatttttaggattttttt-ttatttaaatacatgttttagaaatatattttgtattacaatt 1743597  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 18644305 - 18644376
Alignment:
Q  188 ttttagaatttatttcttatttaaagatatgatttagaaatatgttttgtattacaatttagctctatatat 259  Q
    ||||||||||||| | | ||||||| ||||| |||||||||||||||||||||||||||||  |||||||||    
T  18644305 ttttagaatttatatttcatttaaatatatgttttagaaatatgttttgtattacaatttaattctatatat 18644376  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 43756139 - 43756191
Alignment:
Q  204 ttatttaaagatatgatttagaaatatgttttgtattacaatttagctctata 256  Q
    |||||||||||| |||||||||||||||||||  ||||||||||| |||||||    
T  43756139 ttatttaaagatgtgatttagaaatatgttttacattacaatttacctctata 43756191  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 42480576 - 42480619
Alignment:
Q  203 cttatttaaagatatgatttagaaatatgttttgtattacaatt 246  Q
    |||||||||  |||||||||||||||||||||||||||||||||    
T  42480576 cttatttaataatatgatttagaaatatgttttgtattacaatt 42480619  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 47607876 - 47607809
Alignment:
Q  190 ttagaatttatttcttatttaaagatatgatttagaaatatgttttgtattacaatttagctctatat 257  Q
    ||||||||| || ||  |||||| ||||||||||||| || ||||||||||| |||||||||||||||    
T  47607876 ttagaatttgttcctattttaaatatatgatttagaagtaggttttgtattataatttagctctatat 47607809  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 32532088 - 32532162
Alignment:
Q  176 tgtttaaaatagttttagaatttatttcttatttaaagatatgatttagaaatatgttttgtattacaatttagct 251  Q
    ||||||||||| |||||| |||||||  ||||||||||||| |||||| ||||||| ||| | |||||||||||||    
T  32532088 tgtttaaaatatttttagcatttattctttatttaaagataagatttacaaatatg-tttattttacaatttagct 32532162  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 5586179 - 5586225
Alignment:
Q  163 atatttgaaattatgtttaaaatagttttagaatttatttcttattt 209  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||    
T  5586179 atatttgaaattttgtttaaaatatttttaggatttatttcttattt 5586225  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 46119946 - 46120015
Alignment:
Q  178 tttaaaatagttttagaatttatttcttatttaaagatatgatttagaaatatgttttgtattacaattt 247  Q
    ||||||||| | ||||  ||| || |||||||||| |||| |||||||||||| |||||||| |||||||    
T  46119946 tttaaaatactcttaggttttgttccttatttaaatatataatttagaaatattttttgtatgacaattt 46120015  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 46133080 - 46133149
Alignment:
Q  178 tttaaaatagttttagaatttatttcttatttaaagatatgatttagaaatatgttttgtattacaattt 247  Q
    ||||||||| | ||||  ||| || |||||||||| |||| |||||||||||| |||||||| |||||||    
T  46133080 tttaaaatactcttaggttttgttccttatttaaatatataatttagaaatattttttgtatgacaattt 46133149  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 14153905 - 14153954
Alignment:
Q  195 atttatttcttatttaaagatatgatttagaaatatgttttgtattacaa 244  Q
    |||| ||||||||||||  ||||||||||||||||||||| |||||||||    
T  14153905 atttgtttcttatttaattatatgatttagaaatatgtttggtattacaa 14153954  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 15146 - 15180
Alignment:
Q  225 aaatatgttttgtattacaatttagctctatatat 259  Q
    |||||||||||||||| ||||||||||||||||||    
T  15146 aaatatgttttgtattgcaatttagctctatatat 15180  T

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Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 18128 - 18162
Alignment:
Q  225 aaatatgttttgtattacaatttagctctatatat 259  Q
    |||||||||||||||| ||||||||||||||||||    
T  18128 aaatatgttttgtattgcaatttagctctatatat 18162  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 32240028 - 32239958
Alignment:
Q  173 ttatgtttaaaatagttttagaatttatttcttatttaaagatatgatttagaaatatgttttgtattaca 243  Q
    ||||||||| |||| ||||  |||||| || ||||||||| ||||| |||| |||||| ||||||||||||    
T  32240028 ttatgtttagaatattttttaaatttactttttatttaaatatatgttttacaaatatattttgtattaca 32239958  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 3816475 - 3816511
Alignment:
Q  210 aaagatatgatttagaaatatgttttgtattacaatt 246  Q
    |||||||||| |||||||||| |||||||||||||||    
T  3816475 aaagatatgaattagaaatatattttgtattacaatt 3816511  T

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