View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_low_18 (Length: 341)
Name: NF19176_low_18
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 27700877 - 27701189
Alignment:
| Q |
16 |
ataatgaaaacaacaataaaaaacatcatcttcttcacttcatcaattgacttaccagcatgtcaactacagaaaggaagcgatccatgtagcgtatagc |
115 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27700877 |
ataatgaaaacaacaacaaaaaacaccatcttcttcacttcatcaattgacttaccagcatgtcaactacagaaaggaagcgatccatgtagcgtatagc |
27700976 |
T |
|
| Q |
116 |
tagataaatacagagaggtccaaaaccaaagtacagtccagcctataaaacagatgcattagtttcaatcatacaaattatgaaatggtttagaacatgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27700977 |
tagataaatacagagaggtccaaaaccaaagtacagtccagcctataaaacagatgcattagtttcaatcatacaaattatgaaatggtttagaacatgt |
27701076 |
T |
|
| Q |
216 |
ta----ttaaaaatt--actattgactacaaacatgcataaaatttaagaattgaatcaattatttaataataaaagggcaatctatagattatatccag |
309 |
Q |
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|| |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27701077 |
taaaatttaagaatttaagaattgactacaaacatgcataaaatttaagaattgaatcaattatttaataataaaagggcaatccatagattatatccag |
27701176 |
T |
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| Q |
310 |
gcaaatcagtttc |
322 |
Q |
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||||||||||||| |
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| T |
27701177 |
gcaaatcagtttc |
27701189 |
T |
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