View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_low_2 (Length: 620)
Name: NF19176_low_2
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 189 - 619
Target Start/End: Original strand, 49694545 - 49694966
Alignment:
| Q |
189 |
tccaataagttgttggcattagaagtttcttccaccgtatcaatggtttcagtgttttccacttgcaagttactttccattacattatcagtctcaatta |
288 |
Q |
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| T |
49694545 |
tccaataagttgttggcattagaagtttcttccaccgtatcagtggtttc---------cacttgcaagttactttccattacattatcagtctcaatta |
49694635 |
T |
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| Q |
289 |
actcaaccctaattccatcatctctatctaaaccatataatttcatatcatcattttcaatttcattaaatgcaacacttaccttcccaaattgctcatt |
388 |
Q |
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| T |
49694636 |
actcatccctaattccatcatctctatctaaaccatataatttcatatcatcattttcaatttcattaaatgcaacacttaccttcccaaattgctcatt |
49694735 |
T |
|
| Q |
389 |
ctccaaaccatctctggaatactgcgacataacatcagaatcagttgcagtagcagtagagtctccatcacaagctattcttattccaataccttctcca |
488 |
Q |
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| T |
49694736 |
ctccaaaccatctctggaatactgcgacataacatcagaatcagttgcagtagcagtagagtctccatcacaagctactcttattccaataccttctcca |
49694835 |
T |
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| Q |
489 |
tcaatggaaacatcggaacctgaatcagaattttctttttcaacgtccagcaccttaattctcggtgcgaggacaacattctccggtactctcacaacat |
588 |
Q |
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| T |
49694836 |
tcaatggaaacatcggaacctgaatcagaattttctttttcaacgtccagcaccttaattctcggtgcgaggacaacattctccggtactctcacaacat |
49694935 |
T |
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| Q |
589 |
tcatgatttcaccaccatattcttcgacatc |
619 |
Q |
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| T |
49694936 |
tcatgatttcaccaccatcttcttcgtcatc |
49694966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 49694381 - 49694564
Alignment:
| Q |
1 |
tagtattatcttcaacattttcttggcaatgttacaaaaaatattcaatattttcatcaaaggcatctgtgagagattcacctgtttcaggattctgttc |
100 |
Q |
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| T |
49694381 |
tagtattatcttcaacattttcttggcaatgttccaaaaaatattcaatattttcatcaaaggcatctgatagagattcacctgtttcaggattctgttc |
49694480 |
T |
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| Q |
101 |
taaatagccagcacttgtattatgctccagcattatgctgttgacataaccctcaacatcaaattccaataagctcttggcatt |
184 |
Q |
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| T |
49694481 |
taaatagccagcacttgtattatgctccagcattatgctgttgacataaccctcaacatcaaattccaataagttgttggcatt |
49694564 |
T |
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