View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_low_28 (Length: 256)
Name: NF19176_low_28
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 12368785 - 12369009
Alignment:
| Q |
17 |
attattcattctaaatttgaccttaatataaataatgttggggttccactctagggacataatatctccaatggcatgtaccattaaccgatcagagtgt |
116 |
Q |
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| T |
12368785 |
attattcattctaaatttgacctgaatataaataatgttggggttccactctagggacataatatctctaatggcatgtaccattgatcgatcagagtgt |
12368884 |
T |
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| Q |
117 |
gccatatcatggcacaccttttnnnnnnnnnnnnnnnnnnnnngctttatgagaaaacaaaaccaggaactcgttcctcttctcccttcctcctacatca |
216 |
Q |
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| T |
12368885 |
gccat---atgacacaccttttaaaaaaaataaaaataaaaaagctttatgagaaaacaaaaccagg-----gttcctcttctccctgcctcctacatca |
12368976 |
T |
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| Q |
217 |
cttttcaactcatcgtcaactttcctctctgct |
249 |
Q |
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| T |
12368977 |
cttttcaactcatcgtcaactttcctccctgct |
12369009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 12369001 - 12369046
Alignment:
| Q |
198 |
ctcccttcctcctacatcacttttcaactcatcgtcaactttcctc |
243 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
12369001 |
ctccctgcttcctacatcacttttcaactcatcgtcaactttcctc |
12369046 |
T |
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