View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_low_35 (Length: 237)
Name: NF19176_low_35
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 47302458 - 47302248
Alignment:
| Q |
20 |
agtttcagaatcaattctctgaaacgcggatttggccccaaacgtgggttttctcaaaggtacaaattgaagctttcacagcaaagcaaaatcgaatcaa |
119 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47302458 |
agtttcagaatcaattctctgaaacgtggatttggccccaaacgtgggttttctcaaagctacaaattgaagctttcacagcaaagcaaaatcgaatcaa |
47302359 |
T |
|
| Q |
120 |
acaattt-------aatgacatgtaaatttacataattacccatattacacattaacaactttcttcttcacaacacacaccttcgatacagatctatct |
212 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47302358 |
acaatttgtttttcaatgacatgtaaatttacataattacccatattacacattaacaactttcttcttcacaacacacaccttcgatacaaatctatct |
47302259 |
T |
|
| Q |
213 |
tcccctctgtg |
223 |
Q |
| |
|
||||||||||| |
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|
| T |
47302258 |
tcccctctgtg |
47302248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 30841274 - 30841484
Alignment:
| Q |
21 |
gtttcagaatcaattctctgaaacgcggatttggccccaaacgtgggttttctcaaaggtacaaattgaagctttcacagcaaagcaaaatcgaatcaaa |
120 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30841274 |
gttttagaatcaattctctgaaacgcggatttggccccaaacgtgggttttctcaaagctacaaattgaagctttcacggcaaagcaaaatcgaatcaaa |
30841373 |
T |
|
| Q |
121 |
caattt-------aatgacatgtaaatttacataattacccatattacacattaacaactttcttcttcac-aacacacaccttcgatacagatctatct |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30841374 |
caatttgtttttcaatgacatgtaaatttacataattacccatattacacattaacaactttcttcttcacaaacacacaccttcgatacagatctatct |
30841473 |
T |
|
| Q |
213 |
tcccctctgtg |
223 |
Q |
| |
|
||||||||||| |
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|
| T |
30841474 |
tcccctctgtg |
30841484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 48408605 - 48408392
Alignment:
| Q |
21 |
gtttcagaatcaattctctgaaacgcggatttggccccaaacgtgggtt---ttctcaaaggtacaaattgaagctttcacagcaaagcaaaatcgaatc |
117 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
48408605 |
gtttcataattaattctctgaaacgcggatttggccccaaacgtgggttgttttttcaaagctacaaattgaagctttcacggcaaagcaaaatcgaatc |
48408506 |
T |
|
| Q |
118 |
aaacaattta-------atgacatgtaaatttacataattacccatattacacattaacaactttcttcttcac-aacacacaccttcgatacagatcta |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
48408505 |
aaacaatttatttttcaatgacatgtaaatttacataattacccatattacacattaacaactttcttcttcacaaacacacaccttcgatacagatcta |
48408406 |
T |
|
| Q |
210 |
tcttcccctctgtg |
223 |
Q |
| |
|
|||||||||||||| |
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|
| T |
48408405 |
tcttcccctctgtg |
48408392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 42317530 - 42317741
Alignment:
| Q |
21 |
gtttcagaatcaattctctgaaacgcggatttggccccaaacgtgggttttctcaaaggtacaaattgaagctttcacagcaaagcaaaatc-gaatcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
42317530 |
gtttcagaatcaattctctgaaacgcggatttggccccaaacgtgggttttctcaaagctataaattgaagctttcacggcaaagcaaaatctgaatcaa |
42317629 |
T |
|
| Q |
120 |
acaattt-------aatgacatgtaaatttacataattacccatattacacattaacaactttcttcttcac-aacacacaccttcgatacagatctatc |
211 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
42317630 |
acaatttgtttttcaatgacatgtaaatttacataattacccatattacaagttaacaactttcttcttcacaaacacacaccttcgatacagatctatc |
42317729 |
T |
|
| Q |
212 |
ttcccctctgtg |
223 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42317730 |
ttcccctctgtg |
42317741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 38126248 - 38126047
Alignment:
| Q |
21 |
gtttcagaatcaattctctgaaacgcggatttggccccaaacgtgggttttctcaaaggtacaaattgaagctttcacagcaaagcaaaatcgaatcaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38126248 |
gtttcagaatcaattctctgaaacgcgggtttggccccaaacgtgggttttctcaaagctacaaattgaagctttcacggcaaagcaaaatcgaatcaaa |
38126149 |
T |
|
| Q |
121 |
caattt-------aatgacatgtaaatttacataattacccatattacacattaacaactttcttcttcac-aacacacaccttcgatacagatctatct |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
38126148 |
caatttgtttttcaatgacatgtaaatttacata---------attacacattaacaactttcttcttcacaaacacacatcttcgatacagatctatct |
38126058 |
T |
|
| Q |
213 |
tcccctctgtg |
223 |
Q |
| |
|
||||||||||| |
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|
| T |
38126057 |
tcccctctgtg |
38126047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 156
Target Start/End: Original strand, 18430425 - 18430453
Alignment:
| Q |
128 |
atgacatgtaaatttacataattacccat |
156 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
18430425 |
atgacatgtaaatttacataattacccat |
18430453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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