View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_low_39 (Length: 211)
Name: NF19176_low_39
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_low_39 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 227568 - 227382
Alignment:
| Q |
10 |
gatgaagaaattgatgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaact |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
227568 |
gatgaagaaattgatgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaact |
227469 |
T |
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| Q |
110 |
ttgaccacaaatcaaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaaccggaaatcgagatgatggtaat |
196 |
Q |
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| T |
227468 |
ttgaccacaaatcaaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaactggaaatcgtgatgatggtaat |
227382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 14589810 - 14589996
Alignment:
| Q |
10 |
gatgaagaaattgatgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaact |
109 |
Q |
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| T |
14589810 |
gatgaagaaattgatgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaact |
14589909 |
T |
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| Q |
110 |
ttgaccacaaatcaaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaaccggaaatcgagatgatggtaat |
196 |
Q |
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| T |
14589910 |
ttgaccacaaatcaaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaactggaaatcgtgatgatggtaat |
14589996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 1610536 - 1610679
Alignment:
| Q |
11 |
atgaagaaattgatgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactt |
110 |
Q |
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| T |
1610536 |
atgaaaaaattaatgaatgatagggcgcttgtcagacatctttctgcatgtgagactatgggttcagctagttgcatttgcactgataagacaggaacgt |
1610635 |
T |
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| Q |
111 |
tgaccacaaatcaaatggttgttgacaaaatatggatttgtgaa |
154 |
Q |
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| T |
1610636 |
tgatgaccaaccatatggtggttgataaaatttggatatgtgaa |
1610679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 1624921 - 1625064
Alignment:
| Q |
11 |
atgaagaaattgatgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactt |
110 |
Q |
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| T |
1624921 |
atgaaaaaattaatgaatgatagggcgcttgtcagacatctttctgcatgtgagactatgggttcagctagttgcatttgcactgataagacaggaacgt |
1625020 |
T |
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| Q |
111 |
tgaccacaaatcaaatggttgttgacaaaatatggatttgtgaa |
154 |
Q |
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| T |
1625021 |
tgatgaccaaccatatggtggttgataaaatttggatatgtgaa |
1625064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 40199024 - 40199188
Alignment:
| Q |
26 |
aatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatcaaa |
125 |
Q |
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| T |
40199024 |
aatgagaaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatcaaa |
40199123 |
T |
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| Q |
126 |
tggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaaccggaaatcgagatgat |
190 |
Q |
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| T |
40199124 |
tggttgttgacaaaatatggatttgtgaacaaacgaagccgattaaaagcggaaatcgtgatgat |
40199188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 37757101 - 37757244
Alignment:
| Q |
11 |
atgaagaaattgatgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactt |
110 |
Q |
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| T |
37757101 |
atgaaaaaattaatgaatgacatggcacttgtgagacatctttctgcttgtgagactatgggttcagctagttgcatttgcacagataagacagggacat |
37757200 |
T |
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| Q |
111 |
tgaccacaaatcaaatggttgttgacaaaatatggatttgtgaa |
154 |
Q |
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| T |
37757201 |
taacaactaaccatatggtggttaacaaaatatggatatgtgaa |
37757244 |
T |
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