View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_low_5 (Length: 511)
Name: NF19176_low_5
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 138 - 491
Target Start/End: Complemental strand, 43186836 - 43186482
Alignment:
| Q |
138 |
aatcagaatatagtaacatagttaaaacaatattcttaatcgggtcgtatgataacaatgttttgtttctcatggtaagacacagtccaagatccttttt |
237 |
Q |
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| T |
43186836 |
aatcagaatatagtaacatagttaaaacaatattcttaatcgggtcgtatgataacaatgttttgtttctcatggtaagacacagtccaagatgcttttt |
43186737 |
T |
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| Q |
238 |
aatgtttgattattttagtataaaaatatattggttaataacgagtccggatgaatttcggcgatgaataatgaaaatgaatgaatttatgttatgaaga |
337 |
Q |
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| T |
43186736 |
aatgtttgattatgttagtataaaaatatattggttaataacgagtccggatgaatttctgcgatgaataatgaaaattaatgaatttatgttatgaaga |
43186637 |
T |
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| Q |
338 |
acgagtcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattcct-atagttaagattcaagtggcattgtccaaagatccaagtggggcct |
436 |
Q |
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| T |
43186636 |
acgagtcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattcctaaaagttaagattcaagtggcattgtccaaagatgcaagtggggcct |
43186537 |
T |
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| Q |
437 |
aattgtcatagtgtgaagttgtcaaagcttaggagggatgggtagcatgcaagca |
491 |
Q |
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| T |
43186536 |
aattgtcatagtgtgaagttgtcaaagcttaggagggatgggtagcatgcaagca |
43186482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 43187239 - 43187115
Alignment:
| Q |
18 |
ttacacagtcatgagaattcaaactcaatcaaaaacacacttgattcccttctctattccgttgattggaagattttcagtgttgaaactgaaaattaaa |
117 |
Q |
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| T |
43187239 |
ttacacagtcatgagaattcaaactcaatcaaaaacacacttgattcccttctctattccattgatcggaagattttcagtgttgaaactgaaaattaaa |
43187140 |
T |
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| Q |
118 |
aacctatgtgatctatatataatca |
142 |
Q |
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| T |
43187139 |
aacctatgtgatctatatataatca |
43187115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 23609379 - 23609323
Alignment:
| Q |
343 |
tcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattcctatagttaag |
399 |
Q |
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| T |
23609379 |
tcagagtgaatttcactggtggaatgaaaatgagtgttgtggaatcctacagttaag |
23609323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 23622844 - 23622784
Alignment:
| Q |
331 |
atgaagaacgagtcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattccta |
391 |
Q |
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| T |
23622844 |
atgaagaatgattcagagtaaatttcggtggtggaatgaaaatgagtgatgtggattccta |
23622784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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