View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19176_low_7 (Length: 463)
Name: NF19176_low_7
Description: NF19176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19176_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Complemental strand, 33178463 - 33178029
Alignment:
| Q |
13 |
aatattacttaaaaatatcgagcacgctttgaagagcttaatcttggaatatatatacgtacttaggtactgtttgccctaacnnnnnnnnnn---cttt |
109 |
Q |
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| T |
33178463 |
aatataacttaaaaatatcgagtacgctttgaagagcttaatcttgggatatata--cgtacttag-tactgtttgccctaactttttttttttttcttt |
33178367 |
T |
|
| Q |
110 |
ctacttttctaaacttttaactagcatatggaaatgaaatattaagataaagacctcagaattgattttcttcaaagtacacagcggtgaagtgaagtta |
209 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33178366 |
atacttttctaaacttttagctagcatatggaaatgaaatattaagataaagacctcagaattgattttcttcaaagtacacagcggtgaagtgaagtta |
33178267 |
T |
|
| Q |
210 |
gcagggggattaatgttgtccaattgctccacacttgcttgatattcatgtccctacgtaataaacaaacaagttaacattatttagttagaagcagtat |
309 |
Q |
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| T |
33178266 |
gcagggggattaatgttgtccaattgctccacacttgcttgatattcatgtccctacgta-taaacaaacaagttaacattatttagttagaagcagtat |
33178168 |
T |
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| Q |
310 |
actatataataaaaagaatggagagatagatgcaaatatacacatacttgcacaaagttatcaacaacatgggttgaacgtgtaagaatgttcccagcaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
33178167 |
actatataataaaaagaatggagagatagatgcaaatatacacatacttgcacaaagttatcaacaacatgggttgaacgtgtaaggatgttgccagcaa |
33178068 |
T |
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| Q |
410 |
tgttgaaaagatattcagcatcaaacttagtgtcactat |
448 |
Q |
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| T |
33178067 |
tgttgaaaagatattcagcatcaaacttagtgtcactat |
33178029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 131 - 448
Target Start/End: Complemental strand, 33155550 - 33155241
Alignment:
| Q |
131 |
tagcatatggaaatgaaatattaagataaagacctcagaattgattttcttcaaagtacacagcggtgaagtgaagttagcagggggattaatgttgtcc |
230 |
Q |
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||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||| || |
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| T |
33155550 |
tagcatatgaaaatgaaatattaaaataa-gacctcagaattgattttcttcaaagtacacaacggtgaagtgaagctggcaggggggttaatgttatct |
33155452 |
T |
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| Q |
231 |
aattgctccacacttgcttgatattcatgtccctacgtaataaacaaacaagttaacattatttagttagaagcagtatactatataataaaaagaatgg |
330 |
Q |
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| T |
33155451 |
aactgctccagacttgtttgttgttcatgtccct--gtaataatcaaacaagttaacattattcaactaaaagcagtatactacataaaaagaa-aat-- |
33155357 |
T |
|
| Q |
331 |
agagatagatgcaaatatacacatacttgcacaaagttatcaacaacatgggttgaacgtgtaagaatgttcccagcaatgttgaaaagatattcagcat |
430 |
Q |
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| T |
33155356 |
--aaataggtgcaaatatatacatacttgcacaaagttatcaacaacatgggttgaacgtgtaaggatgttgccagcaatgttgaaaagatattcagcat |
33155259 |
T |
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| Q |
431 |
caaacttagtgtcactat |
448 |
Q |
| |
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|||||||||||||||||| |
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| T |
33155258 |
caaacttagtgtcactat |
33155241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 351 - 448
Target Start/End: Complemental strand, 33137549 - 33137452
Alignment:
| Q |
351 |
acatacttgcacaaagttatcaacaacatgggttgaacgtgtaagaatgttcccagcaatgttgaaaagatattcagcatcaaacttagtgtcactat |
448 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33137549 |
acatacttgcagaacgttatcaacaacatgggttgaacgtgtaaggatgttcccagcaatgttgaaaagagattcagcatcaaacttagtgtcactat |
33137452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 352 - 448
Target Start/End: Original strand, 33290360 - 33290456
Alignment:
| Q |
352 |
catacttgcacaaagttatcaacaacatgggttgaacgtgtaagaatgttcccagcaatgttgaaaagatattcagcatcaaacttagtgtcactat |
448 |
Q |
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||||||||||||| ||| ||||||| || ||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
33290360 |
catacttgcacaacgttttcaacaatataggttgaacgcctaagaatgtttgcagcaatgttgaaaagagattcaacatcaaacttggtgtcactat |
33290456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 33290054 - 33290153
Alignment:
| Q |
141 |
aaatgaaatattaagataaagacctcagaattgattttcttcaaagtacacagcggtgaagtgaagttagcagggggattaatgttgtccaattgctcca |
240 |
Q |
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|||| ||||||||| ||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||||||||| |||| |||||| |||||| |
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| T |
33290054 |
aaataaaatattaaaataaagacctcagaattaattttcttcaaaatacacaacggtggagtgaagctagcagggggatgtgtgttatccaatggctcca |
33290153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 33137787 - 33137721
Alignment:
| Q |
174 |
attttcttcaaagtacacagcggtgaagtgaagttagcagggggattaatgttgtccaattgctcca |
240 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||| || |||||||| || |||| ||||||| |
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| T |
33137787 |
atttgcttcaaagtacacagcggtgaagtgaagctagctggtggattaatattatccaggtgctcca |
33137721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 367 - 448
Target Start/End: Complemental strand, 6679887 - 6679806
Alignment:
| Q |
367 |
ttatcaacaacatgggttgaacgtgtaagaatgttcccagcaatgttgaaaagatattcagcatcaaacttagtgtcactat |
448 |
Q |
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||||||||||||||| ||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
6679887 |
ttatcaacaacatggattgaacgcacaaggatgtttccagcaatgttgaaaatatattcagcatcaaacttagtatcactat |
6679806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 439
Target Start/End: Original strand, 55124991 - 55125033
Alignment:
| Q |
397 |
atgttcccagcaatgttgaaaagatattcagcatcaaacttag |
439 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
55124991 |
atgtttccagcaatgttgaaaagatattcagcgtcaaacttag |
55125033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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