View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19177_low_1 (Length: 226)
Name: NF19177_low_1
Description: NF19177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19177_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 30286466 - 30286266
Alignment:
| Q |
1 |
ctttaagctgtggatttttctctggggtgatctcaaagaaattgccaaacttgttggagtagataggtttgtggtttctcaagttgattggttcagattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30286466 |
ctttaagctgtggatttttctctggggtgatctcaaagaaattgccaaacttgttggagtagataggtttctggtttctcaagttgattggttcagattc |
30286367 |
T |
|
| Q |
101 |
agaggattcactccttctggagctagacttggcatttttgctcagttcttcaatctgttctcttgatacttttactattacatttgcttcctggctctgc |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286366 |
agaagattcactccttctggagctagacttggcatttttgctcagttcttcaatctgttctcttgatacttttactattacatttgcttcctggctctgc |
30286267 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
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|
| T |
30286266 |
t |
30286266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 30304122 - 30303906
Alignment:
| Q |
13 |
gatttttctctggggtgatctcaaagaaattgccaaacttgttggagtagataggtttgtggtttctcaagttgattggttcagattcagaggattcact |
112 |
Q |
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|||||||||| || |||||||||||||| |||||||||| |||||| |||||||||||| | |||||||||||| |||| ||||||| |||||| |||| |
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| T |
30304122 |
gatttttctccggagtgatctcaaagaagttgccaaactcgttggaatagataggtttgcgacttctcaagttgaatggtgcagattcggaggatgcact |
30304023 |
T |
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| Q |
113 |
ccttctg---gagctagacttggcatttttgctcagttcttcaatctgttctcttgatacttttactattacatttgcttcctggctctgcttatgtctc |
209 |
Q |
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||| || |||||||| ||||||| | |||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304022 |
cctcctactagagctagatttggcatgtctgctcaattcctcaatctgttcccttgatacttttactattacatttgcttcctggctctgcttatgtctc |
30303923 |
T |
|
| Q |
210 |
ctatccctaaggcctct |
226 |
Q |
| |
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||||||||||||||||| |
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| T |
30303922 |
ctatccctaaggcctct |
30303906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 30298928 - 30298728
Alignment:
| Q |
1 |
ctttaagctgtggatttttctctggggtgatctcaaagaaattgccaaacttgttggagtagataggtttgtggtttctcaagttgattggttcagattc |
100 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||| |||||||||| |||||| |||||||||| | || |||||||||||| |||| ||||||| |
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| T |
30298928 |
ctttaagttgtggatttttctccggagtgatctcaaagaagttgccaaactcgttggaatagataggttcgcggcttctcaagttgaatggtgcagattc |
30298829 |
T |
|
| Q |
101 |
agaggattcactccttctggagctagacttggcatttttgctcagttcttcaatctgttctcttgatacttttactattacatttgcttcctggctctgc |
200 |
Q |
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|||||| ||||||||||||||||||| || |||| | |||||| ||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
30298828 |
ggaggatccactccttctggagctagattttgcatgtctgctcaattcctcaatctgttctcttgatactttgactattacatttgaatcctggctctgc |
30298729 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
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|
| T |
30298728 |
t |
30298728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 30291384 - 30291252
Alignment:
| Q |
94 |
cagattcagaggattcactccttctggagctagacttggcatttttgctcagttcttcaatctgttctcttgatacttttactattacatttgcttcctg |
193 |
Q |
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|
||||||| |||||| |||||||||| |||||||| ||||||| | |||||| ||| ||||||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
30291384 |
cagattcggaggatgcactccttctagagctagatttggcatgtctgctcaattcctcaatctgttcccttgacactttgactattacatttgcttcctg |
30291285 |
T |
|
| Q |
194 |
gctctgcttatgtctcctatccctaaggcctct |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
30291284 |
gctctgcttatgtctcctatccctaaggcctct |
30291252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 30314924 - 30314792
Alignment:
| Q |
94 |
cagattcagaggattcactccttctggagctagacttggcatttttgctcagttcttcaatctgttctcttgatacttttactattacatttgcttcctg |
193 |
Q |
| |
|
||||||| |||||| |||||||||| |||||||| ||||||| | |||||| ||| ||||||||||| ||||| ||||| |||||||||| ||||||||| |
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| T |
30314924 |
cagattcggaggatgcactccttctagagctagatttggcatgtctgctcaattcctcaatctgttcccttgacactttgactattacatctgcttcctg |
30314825 |
T |
|
| Q |
194 |
gctctgcttatgtctcctatccctaaggcctct |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
30314824 |
gctctgcttatgtctcctatccctaaggcctct |
30314792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 30315039 - 30314930
Alignment:
| Q |
9 |
tgtggatttttctctggggtgatctcaaagaaattgccaaacttgttggagtagataggtttgtggtttctcaagttgattggttcagattcagaggatt |
108 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||| |||||| |||||||||| ||| |||||||||||| |||| ||||||| |||||| |
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| T |
30315039 |
tgtggatttttctccggagtgatctcaaagaagttgccaaactcgttggaatagataggttcatggcttctcaagttgaatggtgcagattcggaggatg |
30314940 |
T |
|
| Q |
109 |
cactccttct |
118 |
Q |
| |
|
|||||||||| |
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| T |
30314939 |
cactccttct |
30314930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 30291499 - 30291390
Alignment:
| Q |
9 |
tgtggatttttctctggggtgatctcaaagaaattgccaaacttgttggagtagataggtttgtggtttctcaagttgattggttcagattcagaggatt |
108 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||| |||||| |||||||||| || |||||||||||| |||| ||||||| |||||| |
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| T |
30291499 |
tgtggatttttctccggagtgatctcaaagaagttgccaaactcgttggaatagataggttcacggcttctcaagttgaatggtgcagattcggaggatg |
30291400 |
T |
|
| Q |
109 |
cactccttct |
118 |
Q |
| |
|
|||||||||| |
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| T |
30291399 |
cactccttct |
30291390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 46809793 - 46809603
Alignment:
| Q |
9 |
tgtggatttttctctggggtgatctcaaagaaattgccaaacttgttggagtagataggtttgtggtttctcaagttgattggttcagattcagaggatt |
108 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| || ||| ||||||||||||||| ||| |||| ||||||||| |
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| T |
46809793 |
tgtggatttttctctggggtaatctcaaagaacttgccaaacttgttggaatagagggggttgcggtttctcaagttgaagggtccagactcagaggata |
46809694 |
T |
|
| Q |
109 |
cactccttctggagctagacttggcatttttgctcagttcttcaatctgttctcttgatacttttactattacatttgcttcctggctctg |
199 |
Q |
| |
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|| || | ||||| || ||||||| | | |||||||| ||||||||||||||||| ||||| |||||| |||| ||||| |||||||| |
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| T |
46809693 |
tgcttctctttgagcttgatttggcatgtctcctcagttcctcaatctgttctcttgacactttgactattgcattagcttcttggctctg |
46809603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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