View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19178_high_1 (Length: 902)
Name: NF19178_high_1
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19178_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 778; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 16 - 885
Target Start/End: Original strand, 14868721 - 14869590
Alignment:
| Q |
16 |
aatataccaattcattcatgttctgtaaccaaaattcattcattcatgcatgctctcttttgtctttgattatgcactgactagaannnnnnnnnnnnnn |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14868721 |
aatataccaattcattcatgttctgtaaccaaaattcattcgttcatgcatgctctcttttgtctttgattatgcactgactagaacatcatcatcatca |
14868820 |
T |
|
| Q |
116 |
nnngggtaagnnnnnnncacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaaga |
215 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14868821 |
tcagggtaagaaaaaaacacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaaga |
14868920 |
T |
|
| Q |
216 |
agaaacaatgctaaaagctgtttttcttccttttatatcaaaaagtcacctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14868921 |
agaaacaatgctaaaagctgtttttcttccttttatatcaaaaagtcacctcatttttgtagtagacatagcaaggctttttgctatgcatggtgtggat |
14869020 |
T |
|
| Q |
316 |
gtaaccataatcaccacaccatcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869021 |
gtaaccataatcaccacaccatcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgt |
14869120 |
T |
|
| Q |
416 |
ttccacaagtacctggtttggcacaaggaatggaaagcttcaacgccgacactcctaatgagatacgttcgaaaatctatcagggactcatcattctcca |
515 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869121 |
ttccacaagtacctggtttggcacgaggaatggaaagcttcaacgccgacactcctaatgagatacgttcgaaaatctatcagggactcatcattctcca |
14869220 |
T |
|
| Q |
516 |
agagcaattcaaacaacaattccgtgacatgaaacctgatttcatagtcactgacatgttctatccttggagtgttgatattgctgatgaattgggaatt |
615 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
14869221 |
agagcaattcaaacaacaattccgtgacatgaaacctgatttcatagtcactgacatgttctatccttggagtgttgatgttgctgatgaattgggaatt |
14869320 |
T |
|
| Q |
616 |
ccaaggttaatttgcattagtggaagttactttgctcattctgcaatgaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgaga |
715 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869321 |
ccaaggttaatttgtattagtggaagttactttgctcattctgcaatgaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgaga |
14869420 |
T |
|
| Q |
716 |
gttttcttcttcctgggttgcctcacaaggtggaaatgaaacgtttacaacttccggattggcttagagcaccgaatgattacacttatttgatgaaaat |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869421 |
gttttcttcttcctgggttgcctcacaaggtggaaatgaaacgtttacaacttccggattggcttagagcaccgaatgattacacttatttgatgaaaat |
14869520 |
T |
|
| Q |
816 |
gattaaagattcagagagaaaaagctatggatcactgtttgatagtcatgagattgagagtacatatgag |
885 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14869521 |
gattaaagattcagagagaaaaagctatggatcactgtttgatagtcatgagattgagagtacatatgag |
14869590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 165 - 860
Target Start/End: Complemental strand, 16909800 - 16909103
Alignment:
| Q |
165 |
ttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaaaagctgtttttcttccttttatatcaaaaa--gtc |
262 |
Q |
| |
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||||||||||| | | |||| ||||||||| |||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |
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| T |
16909800 |
ttaaaacaaaatctaatttctaatggaatcctttggtgtgaaagttgaagaagaaacaatgttaaaagctgtttttcttccctttatatcaaaaaaagtc |
16909701 |
T |
|
| Q |
263 |
acctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccacaccatcaaatgcagccatttttcaaacctc |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
16909700 |
acctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgttaccataatcaccacaccagcaaatgcagccatttttcaaacctc |
16909601 |
T |
|
| Q |
363 |
aatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacaaggaatggaaagcttcaacgcc |
462 |
Q |
| |
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||||||| |||||| || |||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||| || |
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| T |
16909600 |
catcgaccacgattcaagtcgcggtcggtccattagaactcacattgtcaagtttccacaagtacctggtttgccacaaggaatggaaagtttcaatgct |
16909501 |
T |
|
| Q |
463 |
gacactcctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattcaaacaacaattccgtgacatgaaacctgatttcatag |
562 |
Q |
| |
|
||||||||||| || ||| ||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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|
| T |
16909500 |
gacactcctaaagacataatttccaaaatctatcagggacttgccattctccaagagcaattcacacaactatttcgtgacatgaaacctgatttcatag |
16909401 |
T |
|
| Q |
563 |
tcactgacatgttctatccttggagtgttgatattgctgatgaattgggaattccaaggttaatttgcattagtggaagttactttgctcattctgcaat |
662 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |
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| T |
16909400 |
tcactgacatgttttatccttggagtgttgatgttgctgatgaattgggaattccaaggttgatttgtattggtggaagttactttgctcattctgcaat |
16909301 |
T |
|
| Q |
663 |
gaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagttttcttcttcctgggttgcctcacaaggtggaaatgaaacgttta |
762 |
Q |
| |
|
||||||||||||||| || |||||| || |||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| ||||| |
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| T |
16909300 |
gaactctattgaacaatttgaacctcatgccaaagttaaatcgaatagcgtaagttttctgcttcctgggttgcctcacaacgtggaaatgacgcgtttg |
16909201 |
T |
|
| Q |
763 |
caacttccggattggcttagagcaccgaatgattacacttatttgatgaaaatgattaaagattcagagagaaaaagctatggatcactgtttgatag |
860 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
16909200 |
caacttccggattggcttagagcaccaaatggttatacttatttgatgaagatgatcaaagattcagagaaaaaaagctatggatcattgtttgatag |
16909103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 12611241 - 12611293
Alignment:
| Q |
280 |
gacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccac |
332 |
Q |
| |
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||||| ||||| || ||||||||||||||||||||| | |||||||||||||| |
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|
| T |
12611241 |
gacatggcaagactatttgctatgcatggtgtggatatcaccataatcaccac |
12611293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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