View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19178_high_12 (Length: 267)
Name: NF19178_high_12
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19178_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 49247595 - 49247835
Alignment:
| Q |
19 |
ggaaggggaagttcttatgaaaccggcagatttaatgcgagcagttgttcctgttttccctccatctgaatccaaccttgttagagatggatccttggaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49247595 |
ggaaggggaagttcttatgaaaccggcagatttaatgcgagcagttgttcctgttttccctccatctgaatccaaccttgttagagatggatccttggaa |
49247694 |
T |
|
| Q |
119 |
ggcgaaagaagtcctggccacttgttctgtcctccttcagaattttttctgcttttcgatgtaaatggtgacggtcttatatctttcagagagtgagttg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49247695 |
ggcgaaagaagtcctggccacttgttctgtcctccttcagaattttttctgcttttcgatgtaaacggtgacggtcttatatctttcagagagtgagttg |
49247794 |
T |
|
| Q |
219 |
tctggattttcaattattatgggacatttgtgaagaattat |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49247795 |
tctggattttcaattattatgggacatttgtgaagatttat |
49247835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 2681459 - 2681263
Alignment:
| Q |
20 |
gaaggggaagttcttatgaaaccggcagatttaatgcgagcagttgttcctgttttccctccatctgaatccaaccttgttagagatggatccttggaag |
119 |
Q |
| |
|
||||| ||||| || |||| ||| ||||| ||||| |||| || |||||||||||||||||||||||||| ||||||||||||| |||| |||| || |
|
|
| T |
2681459 |
gaaggagaagtactcatgataccagcagacctaatgagagctgtagttcctgttttccctccatctgaatctcaccttgttagagacggatacttgagag |
2681360 |
T |
|
| Q |
120 |
gcgaaagaagtcctggccacttgttctgtcctccttcagaattttttctgcttttcgatgtaaatggtgacggtcttatatctttcagagagtgagt |
216 |
Q |
| |
|
| |||||||| |||||||| || |||| ||||||||||||| ||| |||| || |||||||| |||||| ||||||||||| | ||||||||| |
|
|
| T |
2681359 |
gagaaagaagccctggccatttacgctgttctccttcagaattctttatgctctttgatgtaaacaatgacgggcttatatcttttaaagagtgagt |
2681263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University