View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19178_high_16 (Length: 250)
Name: NF19178_high_16
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19178_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 53687843 - 53687739
Alignment:
| Q |
126 |
ttgagtatataaaggttaactacagctcgagcaattttttct---gtgttgtatatttggaacggtagttaactactgccggaggtaaaaatgtcatttt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
53687843 |
ttgagtatataaaggttaactacagctcgagcaatttttttttttgtgttgtatatttgaaacggtagttaactaccgctggagataaaaatgtcatttt |
53687744 |
T |
|
| Q |
223 |
tatgt |
227 |
Q |
| |
|
||||| |
|
|
| T |
53687743 |
tatgt |
53687739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 53687967 - 53687914
Alignment:
| Q |
2 |
aataataatataatgcgcataatcttattgaagaacttgatgtgtgaatactaa |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53687967 |
aataataatataatgcgcataatcttattgaagaacttgatgtgtgaatactaa |
53687914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 4997093 - 4997133
Alignment:
| Q |
161 |
tttttctgtgttgtatatttggaacggtagttaactactgc |
201 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4997093 |
tttttttgtgttgtatacttggaacggtagttaactactgc |
4997133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 4996508 - 4996454
Alignment:
| Q |
172 |
tgtatatttggaacggtagttaactactgccggaggtaaaaatgtcatttttatgt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||||||| |||||||| |||| |
|
|
| T |
4996508 |
tgtatatttggaacggtagttaactaccgccaga-gtaaaaacgtcattttcatgt |
4996454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 33223193 - 33223237
Alignment:
| Q |
183 |
aacggtagttaactactgccggaggtaaaaatgtcatttttatgt |
227 |
Q |
| |
|
|||||||||||||||| | ||||||| |||||||||||| ||||| |
|
|
| T |
33223193 |
aacggtagttaactaccgtcggaggttaaaatgtcatttctatgt |
33223237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 20807626 - 20807659
Alignment:
| Q |
170 |
gttgtatatttggaacggtagttaactactgccg |
203 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
20807626 |
gttgtatatgtggaacggtagttaactactgccg |
20807659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 19445000 - 19445056
Alignment:
| Q |
171 |
ttgtatatttggaacggtagttaactactgccggaggtaaaaatgtcatttttatgt |
227 |
Q |
| |
|
|||||||| ||||||||||||||||||| | || |||||||| |||||||| |||| |
|
|
| T |
19445000 |
ttgtatatgtggaacggtagttaactaccgttgggggtaaaaacgtcattttcatgt |
19445056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 17773065 - 17773009
Alignment:
| Q |
171 |
ttgtatatttggaacggtagttaactactgccggaggtaaaaatgtcatttttatgt |
227 |
Q |
| |
|
|||||||| ||||||||||||||||||| | || |||||||| |||||||| |||| |
|
|
| T |
17773065 |
ttgtatatgtggaacggtagttaactaccgttgggggtaaaaacgtcattttcatgt |
17773009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 19802614 - 19802570
Alignment:
| Q |
183 |
aacggtagttaactactgccggaggtaaaaatgtcatttttatgt |
227 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
19802614 |
aacggtagttaactaccgccggaggtaaaaacatcattttcatgt |
19802570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 11269135 - 11269171
Alignment:
| Q |
162 |
ttttctgtgttgtatatttggaacggtagttaactac |
198 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
11269135 |
ttttttgtgttgtatacttggaacggtagttaactac |
11269171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University