View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19178_high_5 (Length: 460)
Name: NF19178_high_5
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19178_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 4142023 - 4142464
Alignment:
| Q |
1 |
tactacaagattttgaaggttgacaagaatgccacagaagaagagttgaagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4142023 |
tactacaagattttgaaggttgacaagaatgccacagaagaagagttgaagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccct |
4142122 |
T |
|
| Q |
101 |
caaataagaaagacgctgaagccaaattcaaagagatatccgaagcttatgaggtaacattacgttttctttaatctctgttactagttgtcgttctaac |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4142123 |
caaataaaaaagacgctgaagccaaattcaaagagatatccgaagcttatgaggtaacattacgttttctttaatctctgttactagttgtcgttctaac |
4142222 |
T |
|
| Q |
201 |
tcatagaaat-----tctaaatatgannnnnnngatgaaggttctaagtgatccacaaaagaaagcaatttatgatcaatatggagaagaaggacttaaa |
295 |
Q |
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|||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4142223 |
tcatagaaattctgatctgaatatgatttatttgatgaaggttctaagtgatccacaaaagaaagcaatttatgatcaatatggagaagaaggacttaaa |
4142322 |
T |
|
| Q |
296 |
gggcaagtaccaccacggcctcaagatgctacattcttccaaagtggagatgggccaacaacgtttaggttcaatccaagaaacgcaaacgatatctttg |
395 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4142323 |
gggcaagtaccacca---cctcaagatgctacattcttccaaagtggagatgggccaacaacgtttaggttcaatccaagaaatgcaaacgatatctttg |
4142419 |
T |
|
| Q |
396 |
cagagtttttcgggttttcaagtccgtttggaggaatgggagctg |
440 |
Q |
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|
| T |
4142420 |
cagagtttttcgggttttcaagtccgtttggaggaatgggagctg |
4142464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 4145630 - 4145778
Alignment:
| Q |
8 |
agattttgaaggttgacaagaatgccacagaagaagagttgaagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccctcaaataa |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || || ||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
4145630 |
agattttggaggttgacaagaatgccacagacgatgaattgaagaaagcatatagaaaacttgccatgaaatggcaccctgacaagaatcctgacaataa |
4145729 |
T |
|
| Q |
108 |
gaaagacgctgaagccaaattcaaagagatatccgaagcttatgaggta |
156 |
Q |
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||| || ||||| | ||||||||| ||||| ||||| ||||||||| |
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| T |
4145730 |
gaatgatgctgagactaaattcaaactcatatctgaagcatatgaggta |
4145778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 4146504 - 4146557
Alignment:
| Q |
230 |
atgaaggttctaagtgatccacaaaagaaagcaatttatgatcaatatggagaa |
283 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
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| T |
4146504 |
atgaaggttctaagtgatccgcaaaagagagcaatttatgatcagtatggagaa |
4146557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 38859195 - 38859351
Alignment:
| Q |
1 |
tactacaagattttgaaggttgacaagaatgccacagaagaagagttgaagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccct |
100 |
Q |
| |
|
||||||||| || || ||||||| ||| |||| ||| || || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||| |
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| T |
38859195 |
tactacaagcttctgcaggttgatcggaacgccaaagacgatgacttgaagaaagcttacagaaaactcgccatgaagtggcatcctgataagaa-ccct |
38859293 |
T |
|
| Q |
101 |
ca-aataagaaagacgctgaagccaaattcaaagagatatccgaagcttatgaggtaa |
157 |
Q |
| |
|
| || || ||||| |||||||||||||| || | || || ||||||||||| |||| |
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|
| T |
38859294 |
aataacaaaaaagaagctgaagccaaatttaagcaaatctcagaagcttatgatgtaa |
38859351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 30479768 - 30479923
Alignment:
| Q |
1 |
tactacaagattttgaaggttgacaagaatgccacagaagaagagttgaagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccct |
100 |
Q |
| |
|
|||||||| || ||| ||||||| |||||||||| || || || | ||||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
30479768 |
tactacaaaatcttgcaggttgataagaatgccaacgacgatgaactcaagaaagcttataggaaacttgccatgaaatggcaccctgataaaaatccaa |
30479867 |
T |
|
| Q |
101 |
caaataagaaagacgctgaagccaaattcaaagagatatccgaagcttatgaggta |
156 |
Q |
| |
|
| || || ||||| |||||||| || ||||| | || || ||||||||||||||| |
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|
| T |
30479868 |
ccaacaaaaaagatgctgaagctaagttcaagcaaatttctgaagcttatgaggta |
30479923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 4800444 - 4800362
Alignment:
| Q |
49 |
aagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccctca-aataagaaagacgctgaagccaaattcaa |
131 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||| ||||||||||| |||| | || |||||||| ||||||||||||||||| |
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|
| T |
4800444 |
aagaaagcttatcggaaacttgctatgaaatggcatcctgataagaa-ccctaataacaagaaagatgctgaagccaaattcaa |
4800362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 30480538 - 30480574
Alignment:
| Q |
252 |
aaaagaaagcaatttatgatcaatatggagaagaagg |
288 |
Q |
| |
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||||||||||||| |||||||||||||| |||||||| |
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| T |
30480538 |
aaaagaaagcaatctatgatcaatatggggaagaagg |
30480574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 49917573 - 49917414
Alignment:
| Q |
1 |
tactacaagattttgaaggttgacaagaatgccacagaagaagagttgaagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccct |
100 |
Q |
| |
|
||||| || ||||||||||| || || ||||| |||||||| || ||||||||||| || |||||| | || ||||||||||||||||| ||||| |||| |
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| T |
49917573 |
tactataacattttgaaggtggataaaaatgctacagaagatgatttgaagaaagcatatagaaaattggctatgaaatggcaccctgacaagaa-ccct |
49917475 |
T |
|
| Q |
101 |
ca-aataagaaagacgctgaagccaaattcaaagagatatccgaagcttatgaggtaacat |
160 |
Q |
| |
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| ||||| ||||| ||||||||| |||||| |||| || || ||||||| |||||||| |
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|
| T |
49917474 |
aacaataaaaaagaagctgaagcccgtttcaaacagatctctgaggcttatgcggtaacat |
49917414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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