View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19178_low_14 (Length: 256)
Name: NF19178_low_14
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19178_low_14 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 44700395 - 44700140
Alignment:
| Q |
1 |
agctccgtgaaactctgaatgagactaactatgaggactggaaagattctctcgatctctacttagttattaacaatctcgatttagatttaagaactaa |
100 |
Q |
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| T |
44700395 |
agctccgtgaaactctgaatgagactaactatgaggaccggaaagattctctcgatctctacttagttattaacaatctcgatttagatttaagaactaa |
44700296 |
T |
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| Q |
101 |
gaaacctacttcccttacgaatgaatctactgaattccataagattgtcaatggaaaacgagaagattctaacatggtgtcttaaggtcatatcttacac |
200 |
Q |
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| T |
44700295 |
gaaacctacttcccttacgaatgaatctactgaatcccataagattgtcaatggaaaacgagaagattctaacatggtgtcttaaggtcatatcttacac |
44700196 |
T |
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| Q |
201 |
gatcgagaagtccattgggcgaatcatcccacaaaatgacaatgccaaaagttatc |
256 |
Q |
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| T |
44700195 |
tatcgataagtccattgggcgaatcatcccacaaaatgacaatgccaaaagttatc |
44700140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 44698455 - 44698623
Alignment:
| Q |
72 |
aacaatctcgatttagatttaagaactaagaaacctacttcccttacgaatgaatctactgaattccataagattgtcaatggaaaacgagaagattcta |
171 |
Q |
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| T |
44698455 |
aacaaccttgatttagttttaaaaactgagaagcctacttcccttaccaatgagtctactgaatcccataagaccctctatggaaaatgggaagggtcta |
44698554 |
T |
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| Q |
172 |
acatggtgtcttaaggtcatatcttacacgatcgagaagtccattgggcgaatcatcccacaaaatgac |
240 |
Q |
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| T |
44698555 |
acaaagtgtcttaaggtcatagcttacactatggagaagtccattagacaaagcatcccacaaaatgac |
44698623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 44700504 - 44700554
Alignment:
| Q |
20 |
tgagactaactatgaggactggaaagattctctcgatctctacttagttat |
70 |
Q |
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| T |
44700504 |
tgagactaactatgaggaccggaaagattgtctcgatctctactaagttat |
44700554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 11841101 - 11841038
Alignment:
| Q |
10 |
aaactctgaatgagactaactatgaggactggaaagattctctcgatctctacttagttattaa |
73 |
Q |
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| T |
11841101 |
aaactctgaatgggattaactatgaggactggaaagattctctaaatcactacttagttattaa |
11841038 |
T |
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