View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19178_low_16 (Length: 250)

Name: NF19178_low_16
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19178_low_16
NF19178_low_16
[»] chr7 (2 HSPs)
chr7 (13-123)||(5076143-5076237)
chr7 (191-231)||(5076057-5076097)
[»] chr5 (1 HSPs)
chr5 (29-80)||(35544003-35544054)
[»] chr4 (3 HSPs)
chr4 (29-80)||(55650745-55650796)
chr4 (28-80)||(10290046-10290098)
chr4 (28-80)||(10299955-10300007)
[»] scaffold0570 (1 HSPs)
scaffold0570 (30-80)||(313-363)
[»] scaffold0322 (1 HSPs)
scaffold0322 (30-80)||(7706-7756)
[»] chr6 (2 HSPs)
chr6 (30-80)||(20634879-20634929)
chr6 (28-76)||(22292244-22292292)
[»] chr1 (4 HSPs)
chr1 (30-80)||(7677173-7677223)
chr1 (191-221)||(14859924-14859954)
chr1 (30-66)||(5224186-5224223)
chr1 (28-80)||(26549092-26549144)
[»] chr8 (1 HSPs)
chr8 (28-80)||(23270755-23270807)


Alignment Details
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 5076237 - 5076143
Alignment:
Q  13 tttgttttaatggagcatgaaggtgagaaaaacacaaaaatgagaggttgaattatattttctttttcaaaactttttatgggtgttttactgattagag 112  Q
    |||||||||||||||||||||||||||||||| | ||||| | ||||||||||                |||||||||||||||||||||||||||||||    
T  5076237 tttgttttaatggagcatgaaggtgagaaaaatataaaaaggggaggttgaat----------------aaactttttatgggtgttttactgattagag 5076154  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 5076097 - 5076057
Alignment:
Q  191 caattatactagttcctaccacaaccgagtgtagttcactc 231  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  5076097 caattatactagttcctaccacaatcgagtgtagttcactc 5076057  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 35544054 - 35544003
Alignment:
Q  29 atgaaggtgagaaaaacacaaaaatgagaggttgaattatattttctttttc 80  Q
    ||||||||||||||||||||| || | ||||||||||| | |||||||||||    
T  35544054 atgaaggtgagaaaaacacaagaaggggaggttgaattgtgttttctttttc 35544003  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 55650745 - 55650796
Alignment:
Q  29 atgaaggtgagaaaaacacaaaaatgagaggttgaattatattttctttttc 80  Q
    ||||||||||||||||||||| || ||| ||||||||| | |||||||||||    
T  55650745 atgaaggtgagaaaaacacaagaaggaggggttgaattgtgttttctttttc 55650796  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 10290046 - 10290098
Alignment:
Q  28 catgaaggtgagaaaaacacaaaaatgagaggttgaattatattttctttttc 80  Q
    |||||||||||||||||||||| || | | ||||||||| | |||||||||||    
T  10290046 catgaaggtgagaaaaacacaagaagggggggttgaattgtgttttctttttc 10290098  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 10299955 - 10300007
Alignment:
Q  28 catgaaggtgagaaaaacacaaaaatgagaggttgaattatattttctttttc 80  Q
    |||||||||||||||||||||| || | | ||||||||| | |||||||||||    
T  10299955 catgaaggtgagaaaaacacaagaagggggggttgaattgtgttttctttttc 10300007  T

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Target: scaffold0570 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 363 - 313
Alignment:
Q  30 tgaaggtgagaaaaacacaaaaatgagaggttgaattatattttctttttc 80  Q
    |||||||||||||||||||| || | ||||||||||| | |||||||||||    
T  363 tgaaggtgagaaaaacacaagaaggggaggttgaattgtgttttctttttc 313  T

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Target: scaffold0322 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 7756 - 7706
Alignment:
Q  30 tgaaggtgagaaaaacacaaaaatgagaggttgaattatattttctttttc 80  Q
    |||||||||||||||||||| || | | ||||||||| |||||||||||||    
T  7756 tgaaggtgagaaaaacacaagaagggggggttgaattgtattttctttttc 7706  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 20634879 - 20634929
Alignment:
Q  30 tgaaggtgagaaaaacacaaaaatgagaggttgaattatattttctttttc 80  Q
    |||||||||||||||||||| |||| | ||||||||| | |||||||||||    
T  20634879 tgaaggtgagaaaaacacaagaatggggggttgaattgtgttttctttttc 20634929  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 22292244 - 22292292
Alignment:
Q  28 catgaaggtgagaaaaacacaaaaatgagaggttgaattatattttctt 76  Q
    |||||||||||||||||||||| || | | ||||||||| |||||||||    
T  22292244 catgaaggtgagaaaaacacaagaagggggggttgaattgtattttctt 22292292  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 7677173 - 7677223
Alignment:
Q  30 tgaaggtgagaaaaacacaaaaatgagaggttgaattatattttctttttc 80  Q
    ||||||||||||||||||||||| | | ||||||||| | |||||||||||    
T  7677173 tgaaggtgagaaaaacacaaaaagggggggttgaattgtgttttctttttc 7677223  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 14859924 - 14859954
Alignment:
Q  191 caattatactagttcctaccacaaccgagtg 221  Q
    |||||||||||||||||||||||||||||||    
T  14859924 caattatactagttcctaccacaaccgagtg 14859954  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 5224223 - 5224186
Alignment:
Q  30 tgaaggtgagaaaaacacaa-aaatgagaggttgaatt 66  Q
    |||||||||||||||||||| |||||||||||||||||    
T  5224223 tgaaggtgagaaaaacacaagaaatgagaggttgaatt 5224186  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 26549144 - 26549092
Alignment:
Q  28 catgaaggtgagaaaaacacaaaaatgagaggttgaattatattttctttttc 80  Q
    |||||||||||||||||||||| || | | ||||||||| | |||||||||||    
T  26549144 catgaaggtgagaaaaacacaagaagggggggttgaattgtgttttctttttc 26549092  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 23270807 - 23270755
Alignment:
Q  28 catgaaggtgagaaaaacacaaaaatgagaggttgaattatattttctttttc 80  Q
    |||||||||||||||||||||| || | | ||||||||| | |||||||||||    
T  23270807 catgaaggtgagaaaaacacaagaagggggggttgaattgtgttttctttttc 23270755  T

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