View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19178_low_17 (Length: 250)

Name: NF19178_low_17
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19178_low_17
NF19178_low_17
[»] chr4 (2 HSPs)
chr4 (126-227)||(53687739-53687843)
chr4 (2-55)||(53687914-53687967)
[»] chr7 (3 HSPs)
chr7 (161-201)||(4997093-4997133)
chr7 (172-227)||(4996454-4996508)
chr7 (183-227)||(33223193-33223237)
[»] chr1 (2 HSPs)
chr1 (170-203)||(20807626-20807659)
chr1 (171-227)||(19445000-19445056)
[»] chr8 (1 HSPs)
chr8 (171-227)||(17773009-17773065)
[»] chr6 (1 HSPs)
chr6 (183-227)||(19802570-19802614)
[»] chr3 (1 HSPs)
chr3 (162-198)||(11269135-11269171)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 53687843 - 53687739
Alignment:
Q  126 ttgagtatataaaggttaactacagctcgagcaattttttct---gtgttgtatatttggaacggtagttaactactgccggaggtaaaaatgtcatttt 222  Q
    |||||||||||||||||||||||||||||||||||||||| |   |||||||||||||| |||||||||||||||| || |||| |||||||||||||||    
T  53687843 ttgagtatataaaggttaactacagctcgagcaatttttttttttgtgttgtatatttgaaacggtagttaactaccgctggagataaaaatgtcatttt 53687744  T
Q  223 tatgt 227  Q
    |||||    
T  53687743 tatgt 53687739  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 53687967 - 53687914
Alignment:
Q  2 aataataatataatgcgcataatcttattgaagaacttgatgtgtgaatactaa 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53687967 aataataatataatgcgcataatcttattgaagaacttgatgtgtgaatactaa 53687914  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 4997093 - 4997133
Alignment:
Q  161 tttttctgtgttgtatatttggaacggtagttaactactgc 201  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  4997093 tttttttgtgttgtatacttggaacggtagttaactactgc 4997133  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 4996508 - 4996454
Alignment:
Q  172 tgtatatttggaacggtagttaactactgccggaggtaaaaatgtcatttttatgt 227  Q
    ||||||||||||||||||||||||||| ||| || ||||||| |||||||| ||||    
T  4996508 tgtatatttggaacggtagttaactaccgccaga-gtaaaaacgtcattttcatgt 4996454  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 33223193 - 33223237
Alignment:
Q  183 aacggtagttaactactgccggaggtaaaaatgtcatttttatgt 227  Q
    |||||||||||||||| | ||||||| |||||||||||| |||||    
T  33223193 aacggtagttaactaccgtcggaggttaaaatgtcatttctatgt 33223237  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 20807626 - 20807659
Alignment:
Q  170 gttgtatatttggaacggtagttaactactgccg 203  Q
    ||||||||| ||||||||||||||||||||||||    
T  20807626 gttgtatatgtggaacggtagttaactactgccg 20807659  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 19445000 - 19445056
Alignment:
Q  171 ttgtatatttggaacggtagttaactactgccggaggtaaaaatgtcatttttatgt 227  Q
    |||||||| ||||||||||||||||||| |  || |||||||| |||||||| ||||    
T  19445000 ttgtatatgtggaacggtagttaactaccgttgggggtaaaaacgtcattttcatgt 19445056  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 17773065 - 17773009
Alignment:
Q  171 ttgtatatttggaacggtagttaactactgccggaggtaaaaatgtcatttttatgt 227  Q
    |||||||| ||||||||||||||||||| |  || |||||||| |||||||| ||||    
T  17773065 ttgtatatgtggaacggtagttaactaccgttgggggtaaaaacgtcattttcatgt 17773009  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 19802614 - 19802570
Alignment:
Q  183 aacggtagttaactactgccggaggtaaaaatgtcatttttatgt 227  Q
    |||||||||||||||| ||||||||||||||  ||||||| ||||    
T  19802614 aacggtagttaactaccgccggaggtaaaaacatcattttcatgt 19802570  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 11269135 - 11269171
Alignment:
Q  162 ttttctgtgttgtatatttggaacggtagttaactac 198  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  11269135 ttttttgtgttgtatacttggaacggtagttaactac 11269171  T

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