View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19178_low_19 (Length: 237)
Name: NF19178_low_19
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19178_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 10318087 - 10318301
Alignment:
| Q |
17 |
ggttctcccgatggagatgcaactgagtgtgccatgggcaaagggtaacaatagttgtctactcaagacttcttctgc---aataccnnnnnnngtagtg |
113 |
Q |
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| T |
10318087 |
ggttctcccgatggagatgcaactgagtgtgccatgggcaaagggtaacaatagttgtctacttaagactacttctgctgcaataccaaaaaaagtagtg |
10318186 |
T |
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| Q |
114 |
aaagaggatcccggttattgcttgaggaaaaagtaacaagaaactattattgcatgaggcaaaagatatttat-aaaaaagaataacacgacctccaata |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
10318187 |
aaagaggatcccggttattgcttgaggaaaaagtaacaagaaactattattgcatgaggcaaaagatatttataaaaaaagaataacatgacctccaata |
10318286 |
T |
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| Q |
213 |
tcatctatttcatct |
227 |
Q |
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||||||||||||||| |
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| T |
10318287 |
tcatctatttcatct |
10318301 |
T |
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