View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19178_low_2 (Length: 719)

Name: NF19178_low_2
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19178_low_2
NF19178_low_2
[»] chr5 (11 HSPs)
chr5 (185-704)||(26663249-26663777)
chr5 (185-704)||(26934844-26935372)
chr5 (11-179)||(7317287-7317455)
chr5 (263-316)||(1354390-1354443)
chr5 (272-324)||(34032141-34032193)
chr5 (267-321)||(3758206-3758260)
chr5 (267-329)||(12448669-12448731)
chr5 (269-315)||(17098234-17098280)
chr5 (263-316)||(8761938-8761991)
chr5 (267-316)||(14042474-14042523)
chr5 (263-324)||(36160322-36160383)
[»] chr7 (7 HSPs)
chr7 (11-189)||(17037879-17038057)
chr7 (267-320)||(37138667-37138720)
chr7 (78-157)||(46653911-46653990)
chr7 (254-324)||(1360539-1360609)
chr7 (263-324)||(41431132-41431194)
chr7 (254-324)||(10031954-10032024)
chr7 (273-315)||(37129864-37129906)
[»] chr1 (8 HSPs)
chr1 (11-188)||(34153679-34153856)
chr1 (78-157)||(48166744-48166823)
chr1 (267-324)||(33744181-33744238)
chr1 (263-321)||(2633037-2633095)
chr1 (267-320)||(9221269-9221322)
chr1 (254-306)||(4772043-4772095)
chr1 (269-321)||(36621939-36621991)
chr1 (268-321)||(47031490-47031543)
[»] chr8 (12 HSPs)
chr8 (187-324)||(27055913-27056048)
chr8 (267-316)||(12782788-12782837)
chr8 (279-318)||(43419790-43419829)
chr8 (273-321)||(2445176-2445224)
chr8 (268-324)||(7528274-7528330)
chr8 (268-324)||(42022640-42022696)
chr8 (269-324)||(22209409-22209464)
chr8 (269-315)||(36924047-36924093)
chr8 (291-324)||(23552898-23552931)
chr8 (271-324)||(24103101-24103154)
chr8 (291-324)||(32271173-32271206)
chr8 (263-316)||(37564374-37564427)
[»] chr2 (7 HSPs)
chr2 (254-316)||(2825989-2826051)
chr2 (263-306)||(2888929-2888972)
chr2 (268-324)||(33275940-33275996)
chr2 (254-324)||(8964395-8964465)
chr2 (216-319)||(27948007-27948111)
chr2 (278-324)||(39640144-39640190)
chr2 (267-324)||(44195510-44195567)
[»] scaffold0429 (1 HSPs)
scaffold0429 (78-157)||(3525-3604)
[»] scaffold0009 (1 HSPs)
scaffold0009 (272-324)||(189072-189124)
[»] chr4 (8 HSPs)
chr4 (265-316)||(44690307-44690358)
chr4 (263-324)||(50343878-50343939)
chr4 (267-315)||(53737840-53737888)
chr4 (273-320)||(20262109-20262156)
chr4 (262-321)||(45984085-45984143)
chr4 (267-324)||(10575992-10576048)
chr4 (271-324)||(31871105-31871158)
chr4 (271-320)||(33982432-33982481)
[»] chr3 (4 HSPs)
chr3 (272-315)||(24658487-24658530)
chr3 (268-324)||(48322253-48322309)
chr3 (267-310)||(37775364-37775407)
chr3 (267-306)||(40546348-40546387)
[»] scaffold0047 (1 HSPs)
scaffold0047 (192-245)||(63643-63696)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 185 - 704
Target Start/End: Complemental strand, 26663777 - 26663249
Alignment:
Q  185 gtaaatgttaacgagggttcccaaagtactttttaaggatcataagtagtaagtatttatgnnnnnnnn-tgtgcaataaatacattggaaatcgaaata 283  Q
    |||||||||||||||| |||||| ||| || |||||||||||||  || |||||||||||          |||| ||| |||||||||||||||||||||    
T  26663777 gtaaatgttaacgagg-ttcccagagttctctttaaggatcatatataataagtatttataaaaaaaaaatgtgtaatcaatacattggaaatcgaaata 26663679  T
Q  284 ttcaacttttttaaaaaataatttcttattttaaaatgcttga-----------gga-cacttgttaacaatacccttaaaattaacatagctaaatccc 371  Q
    ||  ||||||||||||||||||||||||||||| ||||||| |           ||| ||||||||||||    ||||||||||||||||||||| ||||    
T  26663678 tttgacttttttaaaaaataatttcttattttagaatgcttaaaaagcgccctgggagcacttgttaaca----ccttaaaattaacatagctaagtccc 26663583  T
Q  372 cctttatataataattgtcactattgcataattttctttgtttcaaaacagtggcggaaacacatggggactgaggatggtcatgacctctcgattaaaa 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| | ||||||| ||| ||||||||    
T  26663582 cctttatataataattgtcactattgcataattttctttgtttcaaaacagtggcggaaacacatgggatctgaggaagatcatgacatcttgattaaaa 26663483  T
Q  472 attaaataaaattttggtgtaggctagaaactaccata---ccctaa-gttaatatgaaatttaaaatgttgccatcctcacttttcatgaaacgctgat 567  Q
    ||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26663482 attaaataaaattttggtgtaggctagaaactaccataataccctaaagttaatatgaaatttaaaatgttgccatcctcacttttcatgaaacgctgat 26663383  T
Q  568 gctcactctttctcactgccgactgcatcacgtcgtcgaccgtcagtatgacgccctccatctctctgtcacccctcttatgttgctcatcttcttctct 667  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  26663382 gctcactctttctcactgccgactccatcacgtcgtcgaccgttagtatgacgccctccatctctctgtcacccctcttatgttgctcatc---ttctct 26663286  T
Q  668 ttgttgtctcctttctctccgttcgttagttacaatt 704  Q
    |||||||||||||||||||||||||||||||||||||    
T  26663285 ttgttgtctcctttctctccgttcgttagttacaatt 26663249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 185 - 704
Target Start/End: Complemental strand, 26935372 - 26934844
Alignment:
Q  185 gtaaatgttaacgagggttcccaaagtactttttaaggatcataagtagtaagtatttatgnnnnnnnn-tgtgcaataaatacattggaaatcgaaata 283  Q
    |||||||||||||||| |||||| ||| || |||||||||||||  || |||||||||||          |||| ||| |||||||||||||||||||||    
T  26935372 gtaaatgttaacgagg-ttcccagagttctctttaaggatcatatataataagtatttataaaaaaaaaatgtgtaatcaatacattggaaatcgaaata 26935274  T
Q  284 ttcaacttttttaaaaaataatttcttattttaaaatgcttga-----------gga-cacttgttaacaatacccttaaaattaacatagctaaatccc 371  Q
    ||  ||||||||||||||||||||||||||||| ||||||| |           ||| ||||||||||||    ||||||||||||||||||||| ||||    
T  26935273 tttgacttttttaaaaaataatttcttattttagaatgcttaaaaagcgccctgggagcacttgttaaca----ccttaaaattaacatagctaagtccc 26935178  T
Q  372 cctttatataataattgtcactattgcataattttctttgtttcaaaacagtggcggaaacacatggggactgaggatggtcatgacctctcgattaaaa 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| | ||||||| ||| ||||||||    
T  26935177 cctttatataataattgtcactattgcataattttctttgtttcaaaacagtggcggaaacacatgggatctgaggaagatcatgacatcttgattaaaa 26935078  T
Q  472 attaaataaaattttggtgtaggctagaaactaccata---ccctaa-gttaatatgaaatttaaaatgttgccatcctcacttttcatgaaacgctgat 567  Q
    ||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26935077 attaaataaaattttggtgtaggctagaaactaccataataccctaaagttaatatgaaatttaaaatgttgccatcctcacttttcatgaaacgctgat 26934978  T
Q  568 gctcactctttctcactgccgactgcatcacgtcgtcgaccgtcagtatgacgccctccatctctctgtcacccctcttatgttgctcatcttcttctct 667  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  26934977 gctcactctttctcactgccgactccatcacgtcgtcgaccgttagtatgacgccctccatctctctgtcacccctcttatgttgctcatc---ttctct 26934881  T
Q  668 ttgttgtctcctttctctccgttcgttagttacaatt 704  Q
    |||||||||||||||||||||||||||||||||||||    
T  26934880 ttgttgtctcctttctctccgttcgttagttacaatt 26934844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 7317455 - 7317287
Alignment:
Q  11 gatgaagcaggtgagggtagcataaaacgtgacaaggagaagaagtagaagaggactggaaggttgattttattttttaatctcatccattgattttgta 110  Q
    |||||||||||| ||||||  | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7317455 gatgaagcaggtaagggtataaaaaaacgtgacagggagaagaagtaaaagaggactggaaggttgattttattttttaatctcagccattgattttgta 7317356  T
Q  111 tgtgccacttgtcatacatctaagcaagggattgggaaactggaggagataactgctggagcagatcca 179  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||    
T  7317355 tgtgccacttgtcatacatctaagcaagagactgggaaactggaggagataactactggagcagatcca 7317287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 1354390 - 1354443
Alignment:
Q  263 aatacattggaaatcgaaatattcaacttttttaaaaaataatttcttatttta 316  Q
    |||| ||| |||||||||||||| |||||||||| ||||||||||||| |||||    
T  1354390 aatatattagaaatcgaaatatttaacttttttataaaataatttcttttttta 1354443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 34032141 - 34032193
Alignment:
Q  272 gaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    ||||| |||||||| |||||||||||| ||||||| ||||||||| |||||||    
T  34032141 gaaattgaaatatttaacttttttaaagaataattacttattttagaatgctt 34032193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 3758260 - 3758206
Alignment:
Q  267 cattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatg 321  Q
    ||||| |||||||||||||  ||||||||||| |||||||  |||||||||||||    
T  3758260 cattgaaaatcgaaatatttgacttttttaaagaataattgattattttaaaatg 3758206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 12448731 - 12448669
Alignment:
Q  267 cattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgcttgagga 329  Q
    ||||| |||| |||||||| ||||||||||   ||||||||||||||||||||| ||| ||||    
T  12448731 cattgaaaattgaaatatttaacttttttattgaataatttcttattttaaaatccttaagga 12448669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 17098234 - 17098280
Alignment:
Q  269 ttggaaatcgaaatattcaacttttttaaaaaataatttcttatttt 315  Q
    |||||||||||||||||  ||||||||||| ||||||| ||||||||    
T  17098234 ttggaaatcgaaatatttgacttttttaaataataattgcttatttt 17098280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 8761991 - 8761938
Alignment:
Q  263 aatacattggaaatcgaaatattcaacttttttaaaaaataatttcttatttta 316  Q
    ||||||||| |||| |||||||| |||||||||| | ||||||||||| |||||    
T  8761991 aatacattgaaaattgaaatatttaacttttttatagaataatttcttttttta 8761938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 14042523 - 14042474
Alignment:
Q  267 cattggaaatcgaaatattcaacttttttaaaaaataatttcttatttta 316  Q
    ||||||||||| |||||||  ||||||||||| |||||||| ||||||||    
T  14042523 cattggaaatcaaaatatttgacttttttaaataataatttattatttta 14042474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 36160383 - 36160322
Alignment:
Q  263 aatacattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    |||| |||| ||||| ||| |||  ||||||||||||||||||| ||||||||| |||||||    
T  36160383 aatatattgaaaatcaaaacatttgacttttttaaaaaataattgcttattttagaatgctt 36160322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 3e-84; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 17037879 - 17038057
Alignment:
Q  11 gatgaagcaggtgagggtagcataaaacgtgacaaggagaagaagtagaagaggactggaaggttgattttattttttaatctcatccattgattttgta 110  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17037879 gatgaagcaggtaagggtagcagaaaacgtgacagggagaagaagtagaagaggactggaaggttgattttattttttaatctcaaccattgattttgta 17037978  T
Q  111 tgtgccacttgtcatacatctaagcaagggattgggaaactggaggagataactgctggagcagatccagactcgtaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17037979 tgtgccacttgtcatacatctaagcaagggattgggaaactggaggagataactactggagcagatccagactcgtaaa 17038057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 37138667 - 37138720
Alignment:
Q  267 cattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaat 320  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||| ||||||||    
T  37138667 cattggaaataaaaatatttaacttttttaaaaaataatttcttaatttaaaat 37138720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 46653990 - 46653911
Alignment:
Q  78 ttttattttttaatctcatccattgattttgtatgtgccacttgtcatacatctaagcaagggattgggaaactggagga 157  Q
    |||| ||||||||||||| |||||| |||| ||  |||||||||||||||||| ||| | |||| |||||||| ||||||    
T  46653990 ttttcttttttaatctcagccattggttttttacatgccacttgtcatacatccaagtaggggactgggaaacaggagga 46653911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 1360609 - 1360539
Alignment:
Q  254 tgtgcaataaatacattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    |||| ||| ||| ||||||||||||||| ||| |||||||||||||||||||| || |||||  |||||||    
T  1360609 tgtgtaatcaatgcattggaaatcgaaacatttaacttttttaaaaaataattactaattttggaatgctt 1360539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 41431132 - 41431194
Alignment:
Q  263 aatacattggaaatcgaaatattcaacttttttaaaa-aataatttcttattttaaaatgctt 324  Q
    |||||||| ||||| |||||||| || |||||||||| |||||||||||| ||||||||||||    
T  41431132 aatacattagaaattgaaatatttaatttttttaaaaaaataatttcttaatttaaaatgctt 41431194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 10031954 - 10032024
Alignment:
Q  254 tgtgcaataaatacattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    |||| ||| ||| ||||||||||||||| ||| |||||||| ||||||||||| || |||||  |||||||    
T  10031954 tgtgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataattactaattttggaatgctt 10032024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 37129864 - 37129906
Alignment:
Q  273 aaatcgaaatattcaacttttttaaaaaataatttcttatttt 315  Q
    |||| |||||||| |||||||||||| ||||||||||||||||    
T  37129864 aaattgaaatatttaacttttttaaagaataatttcttatttt 37129906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 6e-79; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 34153679 - 34153856
Alignment:
Q  11 gatgaagcaggtgagggtagcataaaacgtgacaaggagaagaagtagaagaggactggaaggttgattttattttttaatctcatccattgattttgta 110  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  34153679 gatgaagcaggtaagggtagcagaaaacgtgacagggagaagaagtagaagaggactggaaggttgattttattttttaatctcagccgttgattttgta 34153778  T
Q  111 tgtgccacttgtcatacatctaagcaagggattgggaaactggaggagataactgctggagcagatccagactcgtaa 188  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34153779 tatgccacttgtcatacatctaagcaagggattgggaaactggaggagataactactggagcagatccagactcgtaa 34153856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 48166823 - 48166744
Alignment:
Q  78 ttttattttttaatctcatccattgattttgtatgtgccacttgtcatacatctaagcaagggattgggaaactggagga 157  Q
    |||| ||||||||||||| |||||| |||| ||  |||||||||||||||||| |||||||||| |||||||| ||||||    
T  48166823 ttttcttttttaatctcagccattggttttttacatgccacttgtcatacatccaagcaagggactgggaaacaggagga 48166744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 33744181 - 33744238
Alignment:
Q  267 cattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    ||||| |||||||||||||  ||||||| ||||||||||| |||||||||||||||||    
T  33744181 cattgaaaatcgaaatatttgactttttaaaaaaataattacttattttaaaatgctt 33744238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 2633095 - 2633037
Alignment:
Q  263 aatacattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatg 321  Q
    |||| |||||||||||||| ||| |||||||||||||||| ||| ||||||||| ||||    
T  2633095 aatatattggaaatcgaaacatttaacttttttaaaaaattattgcttattttagaatg 2633037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 9221269 - 9221322
Alignment:
Q  267 cattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaat 320  Q
    ||||||||||||||||||| ||||||| |||| |||||||  ||||||||||||    
T  9221269 cattggaaatcgaaatatttaacttttctaaagaataattgtttattttaaaat 9221322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 4772095 - 4772043
Alignment:
Q  254 tgtgcaataaatacattggaaatcgaaatattcaacttttttaaaaaataatt 306  Q
    |||| ||| ||||||||| |||||||||||||| ||||||| |||||||||||    
T  4772095 tgtgtaattaatacattgaaaatcgaaatattctactttttaaaaaaataatt 4772043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 36621991 - 36621939
Alignment:
Q  269 ttggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatg 321  Q
    ||||||||| ||||||| |||||||||||| ||||||| |||||||| |||||    
T  36621991 ttggaaatcaaaatatttaacttttttaaagaataattgcttattttgaaatg 36621939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 47031543 - 47031490
Alignment:
Q  268 attggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatg 321  Q
    ||||||||||||||||||  | ||||| ||||||||||| ||||||||| ||||    
T  47031543 attggaaatcgaaatattttattttttaaaaaaataattacttattttagaatg 47031490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 187 - 324
Target Start/End: Complemental strand, 27056048 - 27055913
Alignment:
Q  187 aaatgttaacgagggttcccaaagtactttttaaggatcataagtagtaagtatttatgnnnnnnnntgtgcaataaatacattggaaatcgaaatattc 286  Q
    ||||||||||||| | |||| ||||||| ||||||||  ||||||||||| ||||||||        |||| ||| ||||||||||||||||||| |||     
T  27056048 aaatgttaacgagtgctcccgaagtactctttaaggactataagtagtaattatttatgaaaaaa--tgtgtaatcaatacattggaaatcgaaacattt 27055951  T
Q  287 aacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    |||||| ||   ||||||||||||||||||||||||||    
T  27055950 aactttcttttgaaataatttcttattttaaaatgctt 27055913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 12782837 - 12782788
Alignment:
Q  267 cattggaaatcgaaatattcaacttttttaaaaaataatttcttatttta 316  Q
    |||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  12782837 cattggaaatcgaaatattcaacttttttaaagaataattgcatatttta 12782788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 43419790 - 43419829
Alignment:
Q  279 aaatattcaacttttttaaaaaataatttcttattttaaa 318  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  43419790 aaatatttaacttttttaaaaaataatttcttattttaaa 43419829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 2445176 - 2445224
Alignment:
Q  273 aaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatg 321  Q
    ||||||||||||| |||||||  ||||||||||| ||||||||||||||    
T  2445176 aaatcgaaatatttaacttttaaaaaaaataattgcttattttaaaatg 2445224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 7528274 - 7528330
Alignment:
Q  268 attggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    ||||||||||||||||||  |||||  |||| ||||||| |||||||||||||||||    
T  7528274 attggaaatcgaaatatttgactttcgtaaagaataattacttattttaaaatgctt 7528330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 42022640 - 42022696
Alignment:
Q  268 attggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    ||||||||| ||| ||||  |||||||||||||||||||| ||| ||||||||||||    
T  42022640 attggaaattgaactatttgacttttttaaaaaataattttttaatttaaaatgctt 42022696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 22209464 - 22209409
Alignment:
Q  269 ttggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    ||||||||| ||||||| |||||||||||  ||||||| ||| |||||||||||||    
T  22209464 ttggaaatcaaaatatttaacttttttaaggaataattgcttcttttaaaatgctt 22209409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 36924093 - 36924047
Alignment:
Q  269 ttggaaatcgaaatattcaacttttttaaaaaataatttcttatttt 315  Q
    |||||||||||||||||  ||||||||||| ||||||||||| ||||    
T  36924093 ttggaaatcgaaatatttgacttttttaaagaataatttcttgtttt 36924047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 23552898 - 23552931
Alignment:
Q  291 tttttaaaaaataatttcttattttaaaatgctt 324  Q
    |||||||||||||||| |||||||||||||||||    
T  23552898 tttttaaaaaataattgcttattttaaaatgctt 23552931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 24103101 - 24103154
Alignment:
Q  271 ggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    ||||||||||| |||  || |||| ||||||||||||||||||||| |||||||    
T  24103101 ggaaatcgaaacatttgaccttttaaaaaaataatttcttattttagaatgctt 24103154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 32271206 - 32271173
Alignment:
Q  291 tttttaaaaaataatttcttattttaaaatgctt 324  Q
    ||||||||||||||||||||| ||||||||||||    
T  32271206 tttttaaaaaataatttcttaatttaaaatgctt 32271173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 37564374 - 37564427
Alignment:
Q  263 aatacattggaaatcgaaatattcaacttttttaaaaaataatttcttatttta 316  Q
    |||||||||||||| ||| ||||  ||||||||||| |||||||||||| ||||    
T  37564374 aatacattggaaattgaactatttgacttttttaaagaataatttcttaattta 37564427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 2825989 - 2826051
Alignment:
Q  254 tgtgcaataaatacattggaaatcgaaatattcaacttttttaaaaaataatttcttatttta 316  Q
    |||| ||| ||| |||||||||||||||||||  |||||||||||||||||||||||||||||    
T  2825989 tgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttcttatttta 2826051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 2888972 - 2888929
Alignment:
Q  263 aatacattggaaatcgaaatattcaacttttttaaaaaataatt 306  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  2888972 aatacattggaaatcgaaatatttaacttttttaaaaaataatt 2888929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 33275940 - 33275996
Alignment:
Q  268 attggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    |||| |||| |||||||| |||||||||||||||||||||||| ||||| |||||||    
T  33275940 attgaaaattgaaatatttaacttttttaaaaaataatttcttgttttagaatgctt 33275996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 8964465 - 8964395
Alignment:
Q  254 tgtgcaataaatacattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    |||| ||| ||| |||||||||| ||||||||  ||||||||||| ||||||| |||| |||| |||||||    
T  8964465 tgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgctt 8964395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 319
Target Start/End: Original strand, 27948007 - 27948111
Alignment:
Q  216 tttaaggatcataagtagtaagtatttatgnnnnnnnntgtgcaataaatacattggaaatcgaaatattcaacttttttaaaaaa--taatttcttatt 313  Q
    ||||||||||||||||||||||||||||||        |||  ||| ||| ||||||||||||||| |||  ||||||||||| ||  ||||| ||||||    
T  27948007 tttaaggatcataagtagtaagtatttatgaaaatgtgtgt-taatcaatgcattggaaatcgaaacatttgacttttttaaagaatgtaattgcttatt 27948105  T
Q  314 ttaaaa 319  Q
    ||||||    
T  27948106 ttaaaa 27948111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 39640190 - 39640144
Alignment:
Q  278 gaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    |||||||| ||||||||||||||||||||  ||||||| ||||||||    
T  39640190 gaaatatttaacttttttaaaaaataattaattattttgaaatgctt 39640144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 44195567 - 44195510
Alignment:
Q  267 cattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    ||||| |||| ||| |||| ||||||| |||| |||||||||||| ||||||||||||    
T  44195567 cattgtaaattgaattatttaacttttgtaaagaataatttcttaatttaaaatgctt 44195510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 3604 - 3525
Alignment:
Q  78 ttttattttttaatctcatccattgattttgtatgtgccacttgtcatacatctaagcaagggattgggaaactggagga 157  Q
    |||| ||||||||||||| |||||| |||| ||  |||||||||||||||||| |||||| ||| |||||||| ||||||    
T  3604 ttttcttttttaatctcaaccattggttttttacatgccacttgtcatacatccaagcaatggactgggaaacaggagga 3525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 189124 - 189072
Alignment:
Q  272 gaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    ||||| |||||||| |||||||||||| ||||||| |||||||||||||||||    
T  189124 gaaatagaaatatttaacttttttaaagaataattgcttattttaaaatgctt 189072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 44690307 - 44690358
Alignment:
Q  265 tacattggaaatcgaaatattcaacttttttaaaaaataatttcttatttta 316  Q
    ||||||| ||||||||||||| ||||||||||||| |||||| |||||||||    
T  44690307 tacattgaaaatcgaaatatttaacttttttaaaagataattacttatttta 44690358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 50343878 - 50343939
Alignment:
Q  263 aatacattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    ||||||||| ||||  |||||||  ||||||||||| ||||||| |||||||||||||||||    
T  50343878 aatacattgaaaattaaaatatttgacttttttaaagaataattacttattttaaaatgctt 50343939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 53737840 - 53737888
Alignment:
Q  267 cattggaaatcgaaatattcaacttttttaaaaaataatttcttatttt 315  Q
    |||||||||||||||||||  | ||||||||| ||||||||||||||||    
T  53737840 cattggaaatcgaaatatttgaattttttaaagaataatttcttatttt 53737888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 20262156 - 20262109
Alignment:
Q  273 aaatcgaaatattcaacttttttaaaaaataatttcttattttaaaat 320  Q
    |||| |||||||| ||||||||||||||||||||| ||| ||||||||    
T  20262156 aaattgaaatatttaacttttttaaaaaataattttttaatttaaaat 20262109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 45984085 - 45984143
Alignment:
Q  262 aaatacattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatg 321  Q
    |||||||||||||||| ||||||| || ||||||||| |||||||  |||||||||||||    
T  45984085 aaatacattggaaatcaaaatatttaa-ttttttaaagaataattatttattttaaaatg 45984143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 10576048 - 10575992
Alignment:
Q  267 cattggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    ||||||||||| |||||||  | |||||| |||||||||| |||||||||||||||||    
T  10576048 cattggaaatcaaaatatttga-ttttttgaaaaataattacttattttaaaatgctt 10575992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 31871105 - 31871158
Alignment:
Q  271 ggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    |||||| ||||||||  ||||||||| ||||||||||||| |||| ||||||||    
T  31871105 ggaaattgaaatattttacttttttataaaataatttcttcttttgaaatgctt 31871158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 33982481 - 33982432
Alignment:
Q  271 ggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaat 320  Q
    ||||||||||||||| |||||||||| |||||||||| || |||| ||||    
T  33982481 ggaaatcgaaatatttaacttttttataaaataattttttcttttgaaat 33982432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 24658487 - 24658530
Alignment:
Q  272 gaaatcgaaatattcaacttttttaaaaaataatttcttatttt 315  Q
    |||||||||||||| |||||||||||| ||||||||||||||||    
T  24658487 gaaatcgaaatatttaacttttttaaagaataatttcttatttt 24658530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 48322253 - 48322309
Alignment:
Q  268 attggaaatcgaaatattcaacttttttaaaaaataatttcttattttaaaatgctt 324  Q
    |||||||||||||| |||  ||||||| ||||||||||| ||||||||| |||||||    
T  48322253 attggaaatcgaaacatttgactttttaaaaaaataattacttattttagaatgctt 48322309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 310
Target Start/End: Original strand, 37775364 - 37775407
Alignment:
Q  267 cattggaaatcgaaatattcaacttttttaaaaaataatttctt 310  Q
    ||||| ||||||||||||| |||||||||| |||||||||||||    
T  37775364 cattgtaaatcgaaatatttaacttttttataaaataatttctt 37775407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 40546387 - 40546348
Alignment:
Q  267 cattggaaatcgaaatattcaacttttttaaaaaataatt 306  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  40546387 cattggaaatcgaaatatttgacttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 63696 - 63643
Alignment:
Q  192 ttaacgagggttcccaaagtactttttaaggatcataagtagtaagtatttatg 245  Q
    |||||||| ||| ||||| | ||||||||||| || ||||||||||||||||||    
T  63696 ttaacgagtgtttccaaaatgctttttaaggaccaaaagtagtaagtatttatg 63643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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