View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19178_low_20 (Length: 231)
Name: NF19178_low_20
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19178_low_20 |
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| [»] scaffold0123 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 29538798 - 29538594
Alignment:
| Q |
16 |
cattttatttatttcatcttcttgattaactctatcattagatgattctttttatttcttgtaggttaatattagaagctaatatgcagacttgaagagg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29538798 |
cattttatttatttcatcttcttgattaactctatcattagatgattctttttatttcttgtaggttaatattagaagctaatatgcagacttgaagagg |
29538699 |
T |
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| Q |
116 |
aaaagttgaagatggaaacttggttattaagtgtacattaaagtaaagggaatgtgatttgaattgattggtgtatgatactaacgtctaagtactcata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29538698 |
aaaagttgaagatggaaacttggttattaagtgtacattaaagtaaagggaatgtgatttgaattgattggtgtatgatactaacgtctaagtactcata |
29538599 |
T |
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| Q |
216 |
ttctt |
220 |
Q |
| |
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||||| |
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|
| T |
29538598 |
ttctt |
29538594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 693940 - 693865
Alignment:
| Q |
61 |
ttctttttatttcttgtaggttaatattagaag-ctaatatgcagacttgaagaggaaaagttgaagatggaaact |
135 |
Q |
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||||||||||||||||||||| || || || || |||||||| ||||||||||| ||||| ||||| |||||||| |
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| T |
693940 |
ttctttttatttcttgtaggtgaagatgaggaggctaatatggagacttgaagatgaaaatttgaaattggaaact |
693865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 6101 - 5893
Alignment:
| Q |
17 |
attttatttatttcatcttcttgattaactctatcattagatgattctttttatttcttgtaggttaatattagaagctaatatgcagacttgaagagga |
116 |
Q |
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||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
6101 |
attttatttattttatcttcttgattgactctatcattagacgattctttttatttcttgttggttaatattagaacctaatatgcagacttgaagagga |
6002 |
T |
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| Q |
117 |
aaagttgaagatggaaacttggttattaagtgtacattaaagtaaagggaatg-----tgatttgaattgattggtgtatgatactaacgtctaagtact |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6001 |
aaagttgaagatggaaacttggttattaagtgtacattaaagtaaagggaatgtgatgtgatttgaattgatcggtgtatgatactaacgtctaagtact |
5902 |
T |
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| Q |
212 |
catattctt |
220 |
Q |
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||||||||| |
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| T |
5901 |
catattctt |
5893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 287988 - 288185
Alignment:
| Q |
17 |
attttatttatttcatcttcttgattaactctatcattagatgattctttttatttcttgtaggttaatattagaagctaatatgcagacttgaagagga |
116 |
Q |
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|
||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || |
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| T |
287988 |
attttatttattttattttcttgattaactctgtcattagatgattctttttatttcttgtaggttaagattaaaagctaatatgcagacttgaagatga |
288087 |
T |
|
| Q |
117 |
aaagttgaagatggaaacttggttattaagtgtacattaaagtaaagggaatgtgatttgaattgattggtgtatgatactaacgtctaagtactcatat |
216 |
Q |
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||| ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
288088 |
aaacttgaagatggatacttggttat---gtgtacatcaaagtaaagggaatgtgatttgaattgattggtgtatgatactaaggtctaagtactcatat |
288184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 18199809 - 18199612
Alignment:
| Q |
17 |
attttatttatttcatcttcttgattaactctatcattagatgattctttttatttcttgtaggttaatattagaagctaatatgcagacttgaagagga |
116 |
Q |
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||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || |
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| T |
18199809 |
attttatttattttattttcttgattaactctgtcattagatgattctttttatttcttgtaggttaagattaaaagctaatatgcagacttgaagatga |
18199710 |
T |
|
| Q |
117 |
aaagttgaagatggaaacttggttattaagtgtacattaaagtaaagggaatgtgatttgaattgattggtgtatgatactaacgtctaagtactcatat |
216 |
Q |
| |
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||| ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18199709 |
aaacttgaagatggatacttggttat---gtgtacatcaaagtaaagggaatgtgatttgaattgattggtgtatgatactaaggtctaagtactcatat |
18199613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 43222812 - 43222887
Alignment:
| Q |
61 |
ttctttttatttcttgtaggttaatattagaag-ctaatatgcagacttgaagaggaaaagttgaagatggaaact |
135 |
Q |
| |
|
||||||||||||||||||||| || || || || |||||||| ||||||||||| ||||| ||||| |||||||| |
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| T |
43222812 |
ttctttttatttcttgtaggtgaagatgaggaggctaatatggagacttgaagatgaaaatttgaaattggaaact |
43222887 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 39726410 - 39726485
Alignment:
| Q |
61 |
ttctttttatttcttgtaggttaatattagaag-ctaatatgcagacttgaagaggaaaagttgaagatggaaact |
135 |
Q |
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||||||||||||||||||||| || || || || |||||||| ||||||||||| ||||| ||||| |||||||| |
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| T |
39726410 |
ttctttttatttcttgtaggtgaagatgaggaggctaatatggagacttgaagatgaaaatttgaaattggaaact |
39726485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 17055357 - 17055313
Alignment:
| Q |
64 |
tttttatttcttgtaggttaatattagaagctaatatgcagactt |
108 |
Q |
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|||||||||||||||||| | ||||| ||||||||||||||||| |
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| T |
17055357 |
tttttatttcttgtaggtgacaattaggagctaatatgcagactt |
17055313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 29022721 - 29022764
Alignment:
| Q |
60 |
attctttttatttcttgtaggttaatattagaagctaatatgca |
103 |
Q |
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|||||||||||| ||||||||| |||||||||||||||| |||| |
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| T |
29022721 |
attctttttattgcttgtaggtgaatattagaagctaatttgca |
29022764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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