View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19178_low_21 (Length: 220)

Name: NF19178_low_21

Description: NF19178

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19178_low_21

[»] chr4 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 170; E-Value: 2e-91

Query Start/End: Original strand, 6 - 203

Target Start/End: Complemental strand, 25732363 - 25732166

Alignment:

Q	6	tgtcgaagaaaatggggaaggaagcaccgtcgagaagagcgatgactttagggtctggtgctatgaaaccacctggtggcatgttgagtttgaggacagt	105	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25732363	tgtcgaagaggatggggaaggaagcaccgtcgagaagagcgatgacttttgggtctggagcgatgaaaccacctggtggcatgttgagtttgaggacagt	25732264	T

Q	106	ggaattgtatttttcgattctggtttggaagtatttgtcacgtccttggttgtagaagtagtcgtgtctgtcatggaggggtccgatgatgggaagac	203	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25732263	ggagttgtatttttcgattctggtttggaagtatttgtcacgtccttggttgtagaagtagtcatgtctgtcatggaggggtccgatgatgggaagac	25732166	T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 76 - 173

Target Start/End: Complemental strand, 12490668 - 12490571

Alignment:

Q	76	acctggtggcatgttgagtttgaggacagtggaattgtatttttcgattctggtttggaagtatttgtcacgtccttggttgtagaagtagtcgtgtc	173	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12490668	acctggtggcatgttggttctgaagattgttgagttgtatttttggattcttgttgagaagaatttgtctcttccttggttgtagaagtagtcgtgtc	12490571	T

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