View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19178_low_6 (Length: 437)
Name: NF19178_low_6
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19178_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 422
Target Start/End: Complemental strand, 38983446 - 38983031
Alignment:
| Q |
9 |
agcacagaaggaaggatgcttatcataaaagacatcaatggacagagcgtgatcttccctttccacaacaacagtttcaaagagctgctcagataggtcc |
108 |
Q |
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| T |
38983446 |
agcacagaaggaaggatgcttctcataaaagacatcaatggacagagcatgatcttccctttccacaacaacagtttcaaagagctgctcagataggtcc |
38983347 |
T |
|
| Q |
109 |
acatccacaagaactctggaaaaaattccaaaacatctgctctgagttacctcatcaattgcaagaggggtacctaagcctgaagcaatctcaaacaggg |
208 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38983346 |
acatccacaagaactctggaaaaaatcccaaaacgtctgctatgagttacctcatcaattgcaagaggggtacctaagcctgaagcaatctcaaacaggg |
38983247 |
T |
|
| Q |
209 |
ttgtcttcctcgaatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttgcatttgagcttgaggcttgaaatcttttgtccaaca |
308 |
Q |
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| T |
38983246 |
ttgtcttcctctaatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttgcatttgagcttgaggcttgaaatcttttgtccagca |
38983147 |
T |
|
| Q |
309 |
gtagaaacgaaggaacccaggtttcatattcaccacccttaatgcccaaactc--tgcatatcttcaattgaactgaagttaaactcgaaaaaaccctta |
406 |
Q |
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| T |
38983146 |
gtagaaacgaaggaacccaggtttcatattcaccaccctcaatgcccaaactctgtgcatgtcttcaattgaactgaagttaaagtcgaaaaaaccctta |
38983047 |
T |
|
| Q |
407 |
tcaagaggtgtaagat |
422 |
Q |
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| T |
38983046 |
ccaagaggtgtaagat |
38983031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 38834936 - 38834885
Alignment:
| Q |
221 |
aatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttg |
272 |
Q |
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| T |
38834936 |
aatattcctggggtaggtgcatcagccggacccaaatttgcgcatgagtttg |
38834885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 160 - 325
Target Start/End: Complemental strand, 51523559 - 51523394
Alignment:
| Q |
160 |
tcatcaattgcaagaggggtacctaagcctgaagcaatctcaaacagggttgtcttcctcgaatattcttggggtaagtgcatcaacctgacccaaattt |
259 |
Q |
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| T |
51523559 |
tcatcaatggaaagaggggtacacaatccagaggaaatctcaaacaaagttgtttttctccaatattcttgaggtaaatgcatgagcctaacccaaattt |
51523460 |
T |
|
| Q |
260 |
gagcatgagtttgcatttgagcttgaggcttgaaatcttttgtccaacagtagaaacgaaggaacc |
325 |
Q |
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| T |
51523459 |
gggcatgagtttgcacttgagcttgaggcttgaaacccctagtccaacaggagaaacgaagaaacc |
51523394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 190 - 405
Target Start/End: Complemental strand, 44771954 - 44771737
Alignment:
| Q |
190 |
gaagcaatctcaaacagggttgtcttcctcgaatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttgcatttgagcttgaggct |
289 |
Q |
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|||||||||||| | || ||| || ||||| | |||||||||||||| ||||| | | ||||||||||| ||||| ||||||| |||||||||| | |
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| T |
44771954 |
gaagcaatctcatagagagttttcctcctccagtattcttggggtaaatgcataagacacacccaaatttgtgcatgtgtttgcaccagagcttgaggtt |
44771855 |
T |
|
| Q |
290 |
tgaaatcttttgtccaacagtagaaacgaaggaacccaggtttcatattcaccacccttaatgcccaaactct--gcatatcttcaattgaactgaagtt |
387 |
Q |
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|||| ||| | |||||||| ||||| ||||| |||||||| || | ||| | ||||| ||| ||||||| | | ||||||| ||||| |||||||| || |
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| T |
44771854 |
tgaagtctctggtccaacaatagaagcgaagaaacccaggcttgagattgatcacccctaacgcccaaattgtgcgcatatcatcaatggaactgaaatt |
44771755 |
T |
|
| Q |
388 |
aaactcgaaaaaaccctt |
405 |
Q |
| |
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|||||||| |||||||| |
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| T |
44771754 |
gaactcgaagaaaccctt |
44771737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 340
Target Start/End: Original strand, 24979166 - 24979252
Alignment:
| Q |
254 |
aaatttgagcatgagtttgcatttgagcttgaggcttgaaatcttttgtccaacagtagaaacgaaggaacccaggtttcatattca |
340 |
Q |
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|||| |||||||| ||||||| ||||||| |||||||||||| | ||||||||||||||| | || ||||||||||||||||||| |
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| T |
24979166 |
aaatctgagcatgtgtttgcacaagagcttggggcttgaaatctctagtccaacagtagaaatgtagaaacccaggtttcatattca |
24979252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 22753969 - 22754029
Alignment:
| Q |
212 |
tcttcctcgaatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttg |
272 |
Q |
| |
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|||| ||| ||||||| || ||||| |||||||| | |||||||||||| ||||||||||| |
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| T |
22753969 |
tctttctccaatattcctgaggtaaatgcatcaatcggacccaaatttgcgcatgagtttg |
22754029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 293
Target Start/End: Original strand, 28102963 - 28103096
Alignment:
| Q |
160 |
tcatcaattgcaagaggggtacctaagcctgaagcaatctcaaacagggttgtcttcctcgaatattcttggggtaagtgcatcaacctgacccaaattt |
259 |
Q |
| |
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|||||||| |||||||| || ||||| || ||||||||||||| |||||| |||||||| |||||||||| || || ||||| | || |||||||| | |
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| T |
28102963 |
tcatcaatagcaagaggagtgcctaaaccataagcaatctcaaaaagggttctcttcctccaatattcttgaggaaaatgcataagtctaacccaaatct |
28103062 |
T |
|
| Q |
260 |
gagcatgagtttgcatttgagcttgaggcttgaa |
293 |
Q |
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||||||| ||| ||| ||||||||| || ||||| |
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| T |
28103063 |
gagcatgggttcgcacttgagcttggggtttgaa |
28103096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 344
Target Start/End: Complemental strand, 36905038 - 36904854
Alignment:
| Q |
160 |
tcatcaattgcaagaggggtacctaagcctgaagcaatctcaaacagggttgtcttcctcgaatattcttggggtaagtgcatcaacctgacccaaattt |
259 |
Q |
| |
|
|||||||| |||||||| || ||||| || ||||||||||||| |||| ||||||||| |||||||||| || || ||||| | | |||||||| | |
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|
| T |
36905038 |
tcatcaatagcaagaggagtgcctaaaccgaaagcaatctcaaaaagggccgtcttcctccaatattcttgaggcaaatgcataagtataacccaaatct |
36904939 |
T |
|
| Q |
260 |
gagcatgagtttgcatttgagcttgaggcttgaaatcttttgtccaacagtagaaacgaaggaacccaggtttcatattcaccac |
344 |
Q |
| |
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||||||| ||||||| |||||||| || ||||| | ||| |||||| |||||||||||| ||| ||||||| ||| ||||| |
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| T |
36904938 |
gagcatgggtttgcacctgagcttggggtttgaagccccttgaccaacaagagaaacgaaggatccctggtttcagattgaccac |
36904854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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