View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19178_low_8 (Length: 316)
Name: NF19178_low_8
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19178_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 21492110 - 21491803
Alignment:
| Q |
1 |
gatatttgtggcgttgatcatagagcatggtacacaaaaggttgtcctagcaactttggttggatcgctatattagccctcgcactctacatcatattct |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21492110 |
gatatttgcggcgttgatcatagagcatggtacacaaaaggttgtcctagcaactttggttggatcgctatattagccctcgcactctacatcatattct |
21492011 |
T |
|
| Q |
101 |
tctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagcatcaacaacagtgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21492010 |
tctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagcatcaacaacagtgtg |
21491911 |
T |
|
| Q |
201 |
ggtttccaaccttgttgtttcgcaatccttcttaagtttgaccgtagcaattggacctgcttggactttcatgatatttgcaatcattgctattgttgcc |
300 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21491910 |
ggtttccaaccttgttgtttctcaatcattcttaagtttgaccgtagcaattggacctgcttggactttcatgatatttgcaatcattgctattgttgcc |
21491811 |
T |
|
| Q |
301 |
atattctt |
308 |
Q |
| |
|
|| ||||| |
|
|
| T |
21491810 |
attttctt |
21491803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 21558588 - 21558479
Alignment:
| Q |
83 |
cactctacatcatattcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaat |
182 |
Q |
| |
|
|||| |||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||| || || |||||||||||||||||||| |
|
|
| T |
21558588 |
cactatacatcctattcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatatccattaagatacagaggaatatgtggaggaat |
21558489 |
T |
|
| Q |
183 |
agcatcaaca |
192 |
Q |
| |
|
|| |||||| |
|
|
| T |
21558488 |
cgcgtcaaca |
21558479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 86 - 230
Target Start/End: Original strand, 33119985 - 33120129
Alignment:
| Q |
86 |
tctacatcatattcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagc |
185 |
Q |
| |
|
||||||| |||||||| || || ||||||||||| |||||||||||| | ||||||||||| | || || ||||||||||||||||||||||||||||| |
|
|
| T |
33119985 |
tctacataatattcttttcaccaggaatgggaacggttccatgggttatcaactctgaaatacaccctttaaggtatagaggaatatgtggaggaatagc |
33120084 |
T |
|
| Q |
186 |
atcaacaacagtgtgggtttccaaccttgttgtttcgcaatcctt |
230 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||| |||||||| |
|
|
| T |
33120085 |
atcaacaacagtgtgggtctctaacctcattgtttctcaatcctt |
33120129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 33116784 - 33116917
Alignment:
| Q |
97 |
ttcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagcatcaacaacag |
196 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||| | |||||||| || || || || |||||||||||| | ||||||||||| || ||||||| | |
|
|
| T |
33116784 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
33116883 |
T |
|
| Q |
197 |
tgtgggtttccaaccttgttgtttcgcaatcctt |
230 |
Q |
| |
|
| ||| | || |||||| ||||||| |||||||| |
|
|
| T |
33116884 |
tttggatctcaaaccttattgtttctcaatcctt |
33116917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University