View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19178_low_9 (Length: 293)
Name: NF19178_low_9
Description: NF19178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19178_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 8169714 - 8169974
Alignment:
| Q |
20 |
attgattgttggaatgggtaaatgcaatcattttttatgaaattcaaagcttgttcccttgatttacataactccaatcgcatatattgcatgactcttt |
119 |
Q |
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| T |
8169714 |
attgattgttggaatgggtaaatgcaatcattttttatgaaattcgaagcttgttcccttgatttacataactccaatcgcatatattgcatgactcttt |
8169813 |
T |
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| Q |
120 |
catcacttgcccacaataacacatcgtcagcatcactttctttgaatggccggagagtaatccttgactcatgatctattgccatgaccaaaatatgttg |
219 |
Q |
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| T |
8169814 |
catcacttgcccacaataacacatcgtcagcatcactttctttgaatggccggagagtaatccttgactcatgatctattgccatgaccaaaatatgttg |
8169913 |
T |
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| Q |
220 |
atgatggctaagatattttggtatttatataccaaaagtgaatggttagaatgattgatct |
280 |
Q |
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| T |
8169914 |
atgatggctaagatattttggtatttatataccaaaagtgaatggttagaatgattgatct |
8169974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 8172345 - 8172593
Alignment:
| Q |
20 |
attgattgttggaatgggtaaatgcaatcattttttatgaaattcaaagcttgttcccttgatttacataactccaatcgcatatattgcatgactcttt |
119 |
Q |
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| T |
8172345 |
attgattgttggaatgggtaaatacaatctttctttatgaaattcaaagcttgttcccttgatttacataacttcaatcgtgtatattgcatgactcttt |
8172444 |
T |
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| Q |
120 |
catcacttgcccacaataacacatcgtcagcatcactttctttgaatggccggagagtaatccttgactcatgatctattgccatgaccaaaatatgttg |
219 |
Q |
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| T |
8172445 |
catcacttgcccacaataacacatcgtcagcatcactttctttgaatggccggagagtgatccttgactcatgatctattgccatgaccacaatatgtta |
8172544 |
T |
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| Q |
220 |
atgatggctaagatattttggtatttatataccaaaagtgaatggttaga |
269 |
Q |
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| T |
8172545 |
at-atggctaagatattttggtatttatacaccaaaagtgtgtggttaga |
8172593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 8177301 - 8177352
Alignment:
| Q |
20 |
attgattgttggaatgggtaaatgcaatcattttttatgaaattcaaagctt |
71 |
Q |
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| T |
8177301 |
attgattggcggattgggtaaatgcattcattttttatgaaatccaaagctt |
8177352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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