View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19179_high_10 (Length: 406)
Name: NF19179_high_10
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19179_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 32739534 - 32739135
Alignment:
| Q |
1 |
ccctatgactcctacaaggttctttaacatggagaaattaaaattgataacagacccaaaataactaactcaaacaatatattcatcattccggcaattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32739534 |
ccctatgactcctacaaggttctttaacatggagaaattaaaactgataagagacccaaaataactaactcaaacaatatattcatcattccggcaattg |
32739435 |
T |
|
| Q |
101 |
ctttgagcaagtactaatattgtaacatagacacatgataaaggttttggtcaaaataatgacttatatacattattttacatgtttgaatattgtcaaa |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32739434 |
ctttgagcaagtactaatattgtaacacagacacatgataaaggttttggtcaaaataatgacttatatagattattttacatgtttgaatattgtcaaa |
32739335 |
T |
|
| Q |
201 |
aaataaataaaatagattgatcaatttaattttaaacactagttggacaactaccctttcttgggtcacttatattagagtgtaagtgatgtacatgcga |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32739334 |
aaataaataaaatggattgatcaatttaattttaaacactagttggacaactaccctttcttgggtcacttatattagagtgtaagtaatgtacatgcga |
32739235 |
T |
|
| Q |
301 |
atttgtgtctttcgtcttcacttaatctgtactcttctctcatattttctcatctatattatatggaagagaagctatggaatgataaacatccatgttc |
400 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32739234 |
atttgtgtctttcctcttcacttaatttgtactcttctctcatattttctcatctatatgatatggaagagaagctatggaatgataaacatccatgttc |
32739135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 7795024 - 7795056
Alignment:
| Q |
241 |
agttggacaactaccctttcttgggtcacttat |
273 |
Q |
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| T |
7795024 |
agttggacaacaaccctttcttgggtcacttat |
7795056 |
T |
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