View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19179_high_12 (Length: 351)
Name: NF19179_high_12
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19179_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 49937285 - 49937620
Alignment:
| Q |
1 |
atgtttttcagtatttttcaatattatcttttggttaagtatgaattgatcaaaaactattgcagccgagaaacaaacatgggacccagaatttgaatag |
100 |
Q |
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| T |
49937285 |
atgtttttcagtatttttcaatattatcttttggttaagtatgaattgatcaaaaactattgcagccgagaaacaaacatgggacccagaatttgaatag |
49937384 |
T |
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| Q |
101 |
ggctacctccaagttagctgaatgactttgttggatactgacattggccctcaattgccccttttgaagtgaaacagacaacagttgtccgccattagta |
200 |
Q |
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| T |
49937385 |
ggctacctccaagctagctgaatgactttgttggatactgacattggccctcaattgccccttttgaagtgaaacagacaacagttgtccgccattagta |
49937484 |
T |
|
| Q |
201 |
ccatcttcatcactggactgtagtggctcattaaactccacttcaagactttcatcaggcctaccagatgcatccaactgcattccagnnnnnnnnggaa |
300 |
Q |
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| T |
49937485 |
ccatcttcatcactggactgtagtggctcattaaactccacttcaagactttcatcaggcctaccagaggcatccaactgcattccagaaaaaaaaggaa |
49937584 |
T |
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| Q |
301 |
gttacgaaacaattgtatattttttgaatggaaaat |
336 |
Q |
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| T |
49937585 |
gttacgaaacaattgtatattttttgaatggaaaat |
49937620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 287
Target Start/End: Complemental strand, 1910736 - 1910553
Alignment:
| Q |
104 |
tacctccaagttagctgaatgactttgttggatactgacattggccctcaattgccccttttgaagtgaaacagacaacagttgtccgccattagta--c |
201 |
Q |
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| T |
1910736 |
tacctccaagttagcagaatgaaatggttgaaaacaaacattagcccttaattgtcctttctgaagagaaacagacaacagttttccac--tttgtaggc |
1910639 |
T |
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| Q |
202 |
catcttcatcactggactgtagtggctcattaaactccacttcaagactttcatcaggcctaccagatgcatccaactgcattcca |
287 |
Q |
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| T |
1910638 |
catcttcgttatttggctgcagtggaccaacaaactccactgcaagactttcatcaggcctacccgaggcatccaactgtattcca |
1910553 |
T |
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