View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19179_high_20 (Length: 289)

Name: NF19179_high_20
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19179_high_20
NF19179_high_20
[»] chr4 (5 HSPs)
chr4 (95-210)||(43245591-43245705)
chr4 (95-193)||(13428667-13428764)
chr4 (222-283)||(16843066-16843127)
chr4 (152-216)||(10006678-10006742)
chr4 (157-209)||(4414530-4414582)
[»] chr8 (4 HSPs)
chr8 (95-216)||(26403518-26403632)
chr8 (170-209)||(28761630-28761669)
chr8 (109-210)||(38712111-38712212)
chr8 (109-193)||(32493073-32493157)
[»] scaffold0712 (1 HSPs)
scaffold0712 (109-210)||(4816-4917)
[»] scaffold0709 (1 HSPs)
scaffold0709 (109-210)||(4836-4937)
[»] chr1 (6 HSPs)
chr1 (114-211)||(3794258-3794355)
chr1 (109-211)||(3014060-3014162)
chr1 (147-209)||(32364236-32364298)
chr1 (109-211)||(24638812-24638914)
chr1 (109-211)||(44410825-44410927)
chr1 (109-216)||(40960100-40960207)
[»] chr7 (5 HSPs)
chr7 (95-206)||(35331681-35331793)
chr7 (136-211)||(31813601-31813676)
chr7 (137-211)||(5419006-5419080)
chr7 (170-211)||(46170754-46170795)
chr7 (170-210)||(33610704-33610744)
[»] chr5 (12 HSPs)
chr5 (222-289)||(37428628-37428695)
chr5 (222-289)||(37639769-37639836)
chr5 (222-289)||(37711527-37711594)
chr5 (110-211)||(6273241-6273342)
chr5 (113-209)||(14351830-14351926)
chr5 (222-289)||(37382531-37382598)
chr5 (222-289)||(37413452-37413519)
chr5 (157-209)||(17644142-17644194)
chr5 (222-289)||(37823792-37823859)
chr5 (137-211)||(32383804-32383878)
chr5 (157-209)||(18942364-18942416)
chr5 (157-209)||(35456622-35456674)
[»] chr3 (3 HSPs)
chr3 (170-209)||(51537138-51537177)
chr3 (157-209)||(29727852-29727904)
chr3 (109-195)||(35054597-35054683)
[»] chr2 (5 HSPs)
chr2 (111-211)||(6065401-6065501)
chr2 (157-209)||(16106651-16106703)
chr2 (157-209)||(21800619-21800671)
chr2 (170-211)||(10810507-10810548)
chr2 (138-211)||(26606644-26606717)
[»] chr6 (1 HSPs)
chr6 (170-209)||(29419718-29419757)


Alignment Details
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 43245591 - 43245705
Alignment:
Q  95 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtc 194  Q
    ||||||||||| |||||||||||||||||| | | |||||||||||||| |||||| ||||||||||||||||| || |||||||| |||||||||||||    
T  43245591 atatacatattgcattttagtttttaagtgatga-gtcattagttcaattaaatttaatttggttaaataccaataacaatttaatattaagaccgagtc 43245689  T
Q  195 atccaaccgagttatt 210  Q
    ||   |||||||||||    
T  43245690 atatgaccgagttatt 43245705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 13428667 - 13428764
Alignment:
Q  95 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 193  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||||    
T  13428667 atatacatattacattttagtttttaagtg-tcgagtcattagttcaatcaaatttaatttggttgaatatcaataaaaatttaatattaagaccgagt 13428764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 16843066 - 16843127
Alignment:
Q  222 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggaga 283  Q
    |||||| |||||||||| ||||||||| |||||||||| |||| |||||| |||||||||||    
T  16843066 ctcttaaacacatggaatgacatttggtacattgatcttagtttcaacaaattgcaaggaga 16843127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 10006678 - 10006742
Alignment:
Q  152 atttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattctattt 216  Q
    |||||||| |||||| | |||||||||||||||||||| | ||||| ||||||||||||| ||||    
T  10006678 atttggtttaatacctataaaaatttaatcttaagaccaattcatctaaccgagttattcgattt 10006742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 4414582 - 4414530
Alignment:
Q  157 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    |||||||||| | ||| |||||||||||||||||||||||  || ||||||||    
T  4414582 gttaaatacctataaatatttaatcttaagaccgagtcatttaatcgagttat 4414530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 26403518 - 26403632
Alignment:
Q  95 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtc 194  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||       ||||||||||| ||||||| ||||||| |||| ||||    
T  26403518 atatacatattacattttagtttttaagtggtcgagtcattagttgactcaaattt-------ttaaataccaataaaaattgaatcttacgaccaagtc 26403610  T
Q  195 atccaaccgagttattctattt 216  Q
    |||  |||||||||||||||||    
T  26403611 atctgaccgagttattctattt 26403632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 28761630 - 28761669
Alignment:
Q  170 aaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  28761630 aaaaatttaatcttaagaccgagtcacctaaccgagttat 28761669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 38712111 - 38712212
Alignment:
Q  109 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 208  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| ||||||||| ||| |  |||||||||    
T  38712111 ttttagtttttaagtggccgagtcatcggttcaatccgatttaatctagttaaatacatataaaaatttaatcgtaagaccgaatcaacttaccgagtta 38712210  T
Q  209 tt 210  Q
    ||    
T  38712211 tt 38712212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 32493073 - 32493157
Alignment:
Q  109 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 193  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| |||||||||||    
T  32493073 ttttagtttttaagtggccgagtcatgggttcaatccgatttaatctagttaaatacacataaaaatttaatcgtaagaccgagt 32493157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 4816 - 4917
Alignment:
Q  109 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 208  Q
    |||||||||||||||||   |||||| |||||||||  |||| || |||||||||||| | |||||||||||||||||||||  ||||| ||| ||||||    
T  4816 ttttagtttttaagtggctgagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatcttaagaccggatcatctaactgagtta 4915  T
Q  209 tt 210  Q
    ||    
T  4916 tt 4917  T

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Target: scaffold0709 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 4836 - 4937
Alignment:
Q  109 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 208  Q
    |||||||||||||||||   |||||| |||||||||  |||| || |||||||||||| | |||||||||||||||||||||  ||||| ||| ||||||    
T  4836 ttttagtttttaagtggctgagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatcttaagaccggatcatctaactgagtta 4935  T
Q  209 tt 210  Q
    ||    
T  4936 tt 4937  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 3794355 - 3794258
Alignment:
Q  114 gtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 211  Q
    |||||||||| ||  |||||| |||||||||  |||| || || ||||||||| | |||||||||||||||||| || |||||| |||||||||||||    
T  3794355 gtttttaagtagtcgagtcatcagttcaatccgatttaatatgattaaatacctataaaaatttaatcttaagatcgggtcatctaaccgagttattc 3794258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 3014060 - 3014162
Alignment:
Q  109 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 208  Q
    ||||||||||||||| ||  |||||   ||||||||  |||| || | |||||||||| | ||||||||||||||||||||| |||||  ||||||||||    
T  3014060 ttttagtttttaagtagtcgagtcacgggttcaatccgatttaatatagttaaatacctataaaaatttaatcttaagaccgggtcatttaaccgagtta 3014159  T
Q  209 ttc 211  Q
    |||    
T  3014160 ttc 3014162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 32364298 - 32364236
Alignment:
Q  147 attttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    |||| |||||||||||||   | |||||||||||||||||||||||||||| |||||||||||    
T  32364298 atttaatttggttaaatagttataaaaatttaatcttaagaccgagtcatctaaccgagttat 32364236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 24638914 - 24638812
Alignment:
Q  109 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 208  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| ||||||||||||| |  |||||||||    
T  24638914 ttttagtttttaagtggccgagtcatcggttcaatcctatttaatctagttaaatacatataaaaatttaatcgtaagaccgagtcaacttaccgagtta 24638815  T
Q  209 ttc 211  Q
    |||    
T  24638814 ttc 24638812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 44410927 - 44410825
Alignment:
Q  109 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 208  Q
    |||| ||||||||||||   ||||||| ||||||||  |||| ||  |||||| |||| | ||| |||||||||||| ||||||||||| | ||||||||    
T  44410927 tttttgtttttaagtggccgagtcattggttcaatccgatttaatcgggttaattacctataaagatttaatcttaaaaccgagtcatctagccgagtta 44410828  T
Q  209 ttc 211  Q
    |||    
T  44410827 ttc 44410825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 40960100 - 40960207
Alignment:
Q  109 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 208  Q
    |||||||||||||||  | |||||||  ||||||||  || | |  |||||||||||| | ||||| |||||||||||| || |||||  ||||||||||    
T  40960100 ttttagtttttaagtaatcaagtcatcggttcaatccgatctaacctggttaaatacctataaaaaattaatcttaagatcgggtcatgtaaccgagtta 40960199  T
Q  209 ttctattt 216  Q
    ||| ||||    
T  40960200 ttcaattt 40960207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 35331793 - 35331681
Alignment:
Q  95 atatacatattacattttagtttttaagtggtaaagt-cattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 193  Q
    ||||||||||||||||||||||| ||||||   | |  ||||| ||||||||||||| ||||||||||||   || ||||||||||||||||||  ||||    
T  35331793 atatacatattacattttagtttctaagtgtcgacggacattaattcaatcaaatttaatttggttaaatcttaataaaaatttaatcttaagatggagt 35331694  T
Q  194 catccaaccgagt 206  Q
    |||  ||||||||    
T  35331693 catttaaccgagt 35331681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 31813676 - 31813601
Alignment:
Q  136 agttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 211  Q
    ||||||||| ||||| || |||||||||||| | |||||||||| ||||||||||  ||||| |||||||||||||    
T  31813676 agttcaatccaatttaatatggttaaatacctataaaaatttaaccttaagaccggatcatctaaccgagttattc 31813601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 5419080 - 5419006
Alignment:
Q  137 gttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 211  Q
    |||||||| ||| | || |||||||||||| | ||||||||||||||||||| | ||||| ||||||||||||||    
T  5419080 gttcaatccaatctaatctggttaaatacctataaaaatttaatcttaagacagggtcatacaaccgagttattc 5419006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 46170795 - 46170754
Alignment:
Q  170 aaaaatttaatcttaagaccgagtcatccaaccgagttattc 211  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  46170795 aaaaatttaatcttaaggccgagtcatctaaccgagttattc 46170754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 33610744 - 33610704
Alignment:
Q  170 aaaaatttaatcttaagaccgagtcatccaaccgagttatt 210  Q
    |||||||||||||||| | ||||||||| ||||||||||||    
T  33610744 aaaaatttaatcttaaaaacgagtcatctaaccgagttatt 33610704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 37428695 - 37428628
Alignment:
Q  222 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttcc 289  Q
    |||||| || |||||||| | ||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  37428695 ctcttaaactcatggaagtatatttggcacgttgatctcagtttcaacaagttgcaaggagatcttcc 37428628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 37639836 - 37639769
Alignment:
Q  222 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttcc 289  Q
    |||||| ||||||||||||||||| || |||||||||| |||| ||||| |||||||||| |||||||    
T  37639836 ctcttaaacacatggaaggacattcggtacattgatcttagtttcaacatgttgcaaggacatcttcc 37639769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 37711594 - 37711527
Alignment:
Q  222 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttcc 289  Q
    |||||| || |||||||||||||| || |||||||||| |||| ||||| ||||||||||||||||||    
T  37711594 ctcttaaactcatggaaggacattcggtacattgatcttagtttcaacatgttgcaaggagatcttcc 37711527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 6273342 - 6273241
Alignment:
Q  110 tttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    |||||||||||||||    |||||||  |||||||  |||| || ||||| |||||  | ||||||||||||||||| |||||||||| |||||||||||    
T  6273342 tttagtttttaagtgtctgagtcattcattcaatccgatttaatctggttcaatacatataaaaatttaatcttaaggccgagtcatctaaccgagttat 6273243  T
Q  210 tc 211  Q
    ||    
T  6273242 tc 6273241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 14351830 - 14351926
Alignment:
Q  113 agtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    ||||||||||||||  ||||||| |||||| |  |||| ||  | ||||||||| | ||||||||||||||||||||| |||||  |||||||||||    
T  14351830 agtttttaagtggtcgagtcattggttcaaccctatttaataagattaaatacctataaaaatttaatcttaagaccgggtcatataaccgagttat 14351926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 37382531 - 37382598
Alignment:
Q  222 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttcc 289  Q
    |||||||||||||||| |||||||   ||  ||||||| |||| ||||||||||||||||||||||||    
T  37382531 ctcttacacacatggagggacattcaacatgttgatctcagtttcaacaagttgcaaggagatcttcc 37382598  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 37413452 - 37413519
Alignment:
Q  222 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttcc 289  Q
    |||||||||||||||| ||| ||| | || || ||||| |||| ||||||||||||||||||||||||    
T  37413452 ctcttacacacatggagggaaattcgacatatcgatctcagtttcaacaagttgcaaggagatcttcc 37413519  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 17644142 - 17644194
Alignment:
Q  157 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    |||||||||| | ||| |||||||||||||||||||||||  |||||||||||    
T  17644142 gttaaatacctataaatatttaatcttaagaccgagtcatttaaccgagttat 17644194  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 37823859 - 37823792
Alignment:
Q  222 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttcc 289  Q
    |||||| || |||||||||||||||||  | |||| || |||| ||||||||| ||||||||||||||    
T  37823859 ctcttaaactcatggaaggacatttggtccgttgacctcagtttcaacaagttacaaggagatcttcc 37823792  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 32383804 - 32383878
Alignment:
Q  137 gttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 211  Q
    ||||||||  |||| || || ||||||||| | |||||||||||||| |||||| ||||||  ||||||||||||    
T  32383804 gttcaatctgatttaatctgattaaatacctataaaaatttaatcttgagaccgggtcatcttaccgagttattc 32383878  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 18942416 - 18942364
Alignment:
Q  157 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    |||||||||| | ||| |||||||||||||||||||||||  ||| |||||||    
T  18942416 gttaaatacctataaatatttaatcttaagaccgagtcatttaactgagttat 18942364  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 35456674 - 35456622
Alignment:
Q  157 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    |||||||||| | ||| |||||||||||||||| ||||||  |||||||||||    
T  35456674 gttaaatacctataaatatttaatcttaagaccaagtcatttaaccgagttat 35456622  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 51537138 - 51537177
Alignment:
Q  170 aaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  51537138 aaaaatttaatcttaagaccgagtcatctaaccgagttat 51537177  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 29727904 - 29727852
Alignment:
Q  157 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    |||||||| | | |||||||||||||||||||||||||||| ||| |||||||    
T  29727904 gttaaatagctataaaaatttaatcttaagaccgagtcatctaactgagttat 29727852  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 35054597 - 35054683
Alignment:
Q  109 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtca 195  Q
    |||||||||||||||||    |||||  |||||||| ||||| || | |||||||||  | |||||||||||| |||||||||||||    
T  35054597 ttttagtttttaagtggccgggtcatcggttcaatccaatttaatctagttaaatacatataaaaatttaatcgtaagaccgagtca 35054683  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 6065401 - 6065501
Alignment:
Q  111 ttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttatt 210  Q
    |||||||||||||||   ||||||  ||||||||  |||| || || ||||||||| | ||||| ||| ||||||| || ||||||| ||||||||||||    
T  6065401 ttagtttttaagtggccgagtcatcggttcaatccgatttaatctgattaaatacctataaaaaattattcttaaggccaagtcatcaaaccgagttatt 6065500  T
Q  211 c 211  Q
    |    
T  6065501 c 6065501  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 16106651 - 16106703
Alignment:
Q  157 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    |||||||| | | |||||||||||||||||| ||||||||| |||||||||||    
T  16106651 gttaaatagctataaaaatttaatcttaagatcgagtcatctaaccgagttat 16106703  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 21800619 - 21800671
Alignment:
Q  157 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    |||||||||| | ||| |||||||||||||||||||||||  |||||||||||    
T  21800619 gttaaatacctataaatatttaatcttaagaccgagtcatttaaccgagttat 21800671  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 10810507 - 10810548
Alignment:
Q  170 aaaaatttaatcttaagaccgagtcatccaaccgagttattc 211  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||    
T  10810507 aaaaatttaatcttacgaccgggtcatacaaccgagttattc 10810548  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 26606717 - 26606644
Alignment:
Q  138 ttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 211  Q
    ||||||| ||| | || ||||| |||||| | ||||||||||||||||||  | |||||| |||||||||||||    
T  26606717 ttcaatccaatctaatctggttcaatacctataaaaatttaatcttaagattgggtcatctaaccgagttattc 26606644  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 29419718 - 29419757
Alignment:
Q  170 aaaaatttaatcttaagaccgagtcatccaaccgagttat 209  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  29419718 aaaaatttaatcttaagaccgagtcacctaaccgagttat 29419757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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