View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19179_high_3 (Length: 518)
Name: NF19179_high_3
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19179_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 51431749 - 51432233
Alignment:
| Q |
18 |
aatggaaattctgaagacaaaatatcaaccaaaagccatagaagatttaaattagtatcatattgattaatatatagtacttgatgaagaaatgtatctt |
117 |
Q |
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| T |
51431749 |
aatggaaattctgaagacaaaatatcaaccaaaagccatagaagatttaaattagtatcatattgattaatatatagtacttgatgaagaaatgtatctt |
51431848 |
T |
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| Q |
118 |
tggttacataccgaccaaaattgattttaaacgaattgacttagcaacaaaaatttaaaaagaaaatatgaaatgcgtctctaattccgtctaaaaagat |
217 |
Q |
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| T |
51431849 |
tggttccacaccgaccaaaattgattttaaacgaattgacttagcaacaaaaatttaaaaagaaaatatgaaatgcgtctctaattccgtctaaaaagat |
51431948 |
T |
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| Q |
218 |
caaattagtgtgaaagttcattttccggtttccaattttggttgtgaattctatgcttgcagtagtgagtgttcgagaagtgtttttaaagagtgtgtta |
317 |
Q |
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| T |
51431949 |
caaattagtgagaaagttcattttccggtttccaattttggttgtgaattctatgcttgtagtagtgagtgttcgaaaagtgtttttaaagagtgtgtta |
51432048 |
T |
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| Q |
318 |
ctaacgctcctctttagtagtaataatataataaaagagatagcaccttgcatcctgcaaatggaactcttctcagcagcaggaaaaccaactgatgggg |
417 |
Q |
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| T |
51432049 |
ctaacgctcctctttagtagtaataatataataaaagagatagcaccttgcatcctgcaaatggaactcttctcagcagcaggaaaaccaactgatgggg |
51432148 |
T |
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| Q |
418 |
gagaaggcaaattgtcagagtttccttgtggagaagaaggggtggtactggaaaagagtgaattgaagggaattccacttttcat |
502 |
Q |
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| T |
51432149 |
gagaaggcaaattgtcagagtttccttgtggagaagaaggggtggtactggaaaagagtgaattgaagggaattccacttttcat |
51432233 |
T |
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