View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19179_high_4 (Length: 478)
Name: NF19179_high_4
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19179_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 40309681 - 40310141
Alignment:
| Q |
18 |
taaaggtctctcaaatatcatatctctttgattacaaattgcagaagagacaaattcattactattgcttcgtttgtgaaaatgaaactcatcattagac |
117 |
Q |
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| T |
40309681 |
taaaggtctctcgaatatcatatctctttgattacaaattgcagaagagacaaattcattactattgcttcgtttgtgaaaatgaaactcatcattagac |
40309780 |
T |
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| Q |
118 |
ttcttgacatggtcagactccaatgtatattgattactaggatgacagttcacacatggagacccttgaggaagtttgttataataagcaatcggattaa |
217 |
Q |
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| T |
40309781 |
ttcttgacatggtcagactccaatgtatattgattactaggatgacagttcacacatggagacccttgaggaagtttgttataataagcaatcggattaa |
40309880 |
T |
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| Q |
218 |
caaaattggtattgtctacatacaaagagttgtcacctggaactttttccgcgacaaagggaataatgttttcattagcaacattatatggttgatcctt |
317 |
Q |
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| T |
40309881 |
caaaattggtattgtctacatacaaagagttgtcacctggaactttttctgcgacaaagggaataatgttttcattagcaacattatatggttgatcctt |
40309980 |
T |
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| Q |
318 |
aaataactgaactttagatatttttagatctttaggcagtacacggatgggagatggaggcttttgattaaatgaccttcctggtacatttaatgctgtt |
417 |
Q |
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| T |
40309981 |
aaataactgaactttagatatttttagatctttaggcagtacgcggatgggagatggaggcttttgattaaatgaccttcctggtacatttaatgctgtt |
40310080 |
T |
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| Q |
418 |
aaatatggacctcgttttgacgttatgcttgtcaactttgaagaggttgggttgcaatcct |
478 |
Q |
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| T |
40310081 |
aaatatggacctcgttttgacattatgcttgtcaactttgaagaggttgggttgcaatcct |
40310141 |
T |
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Back To:
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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 14689135 - 14689010
Alignment:
| Q |
23 |
gtctctcaaatatcatatctctttgattacaaattgcagaagagacaaattcattactattgcttcgtttgtgaaaatgaaactcatcattagacttctt |
122 |
Q |
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|||||||| | ||||||||| ||||||||||||||||| ||||||||| ||| ||| ||||| || || |||||| |||||| ||| |||| |||||| | |
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| T |
14689135 |
gtctctcataaatcatatctgtttgattacaaattgcataagagacaatttcgttagtattggtttgtctgtgaatatgaaaatcagcattggacttcct |
14689036 |
T |
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| Q |
123 |
gacatggtcagactccaatgtatatt |
148 |
Q |
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| T |
14689035 |
gacttgttcagacaacaatgtatatt |
14689010 |
T |
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