View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19179_high_7 (Length: 426)

Name: NF19179_high_7
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19179_high_7
NF19179_high_7
[»] chr2 (7 HSPs)
chr2 (49-412)||(32706083-32706445)
chr2 (19-120)||(32718272-32718373)
chr2 (19-120)||(32724677-32724778)
chr2 (265-342)||(32718574-32718651)
chr2 (265-342)||(32724979-32725056)
chr2 (134-187)||(32718419-32718472)
chr2 (134-187)||(32724824-32724877)
[»] chr6 (2 HSPs)
chr6 (263-347)||(14903439-14903523)
chr6 (44-120)||(14903644-14903720)
[»] chr5 (5 HSPs)
chr5 (9-92)||(2999378-2999461)
chr5 (263-347)||(2999658-2999748)
chr5 (300-347)||(7432420-7432467)
chr5 (122-187)||(2999481-2999553)
chr5 (363-410)||(3000803-3000850)
[»] chr8 (1 HSPs)
chr8 (301-345)||(39851723-39851767)
[»] chr4 (1 HSPs)
chr4 (301-345)||(44476235-44476279)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 49 - 412
Target Start/End: Original strand, 32706083 - 32706445
Alignment:
Q  49 ttttggagtcagctttcttgtattcctctgtgtagacgttttatatcaagttgaactctattctaaaatttcgattcttaaaatatctcaccttgttgag 148  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  32706083 ttttagagtcagctttcttttattcctctgtgtagacgttttatatcaagttgaactctattctaaaattacaattcttaaaatatctcaccttgttgag 32706182  T
Q  149 tgttagtgttgatagacatcttattcagattttgtttagctcattgcaagatagtttaagattgtcggtgtttaatgttttacctacatatcaatcattg 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32706183 tgttagtgttgatagacatcttattcagattttgtttagctcattgcatgatagtttaagattgtcggtgtttaatgttt-acctacatatcaatcattg 32706281  T
Q  249 agtgagtggtattcttgtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcattgaatag 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706282 agtgagtggtattcttgtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcattgaatag 32706381  T
Q  349 aagaagagaagcgtgtttccaacactagttatacaagaagagaagcgtgttcgctttgtggtga 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706382 aagaagagaagcgtgtttccaacactagttatacaagaagagaagcgtgttcgctttgtggtga 32706445  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 32718272 - 32718373
Alignment:
Q  19 tgtagagctaggattttagtagccggttggttttggagtcagctttcttgtattcctctgtgtagacgttttatatcaagttgaactctattctaaaatt 118  Q
    ||||||||||||| || |||||| ||||| |||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32718272 tgtagagctaggagttcagtagctggttgtttttggagtctgcttttctgtattcctctgtgtagacgttttacatcaagttgaactctattctaaaatt 32718371  T
Q  119 tc 120  Q
    ||    
T  32718372 tc 32718373  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 32724677 - 32724778
Alignment:
Q  19 tgtagagctaggattttagtagccggttggttttggagtcagctttcttgtattcctctgtgtagacgttttatatcaagttgaactctattctaaaatt 118  Q
    ||||||||||||| || |||||| ||||| |||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32724677 tgtagagctaggagttcagtagctggttgtttttggagtctgcttttctgtattcctctgtgtagacgttttacatcaagttgaactctattctaaaatt 32724776  T
Q  119 tc 120  Q
    ||    
T  32724777 tc 32724778  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 32718574 - 32718651
Alignment:
Q  265 gtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcatt 342  Q
    |||||||||||| ||||||| | ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  32718574 gtgcatgagatcgttatttagtgaactcagagagctggcttgatgcaatttctaccttgattacatatttaaatcatt 32718651  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 32724979 - 32725056
Alignment:
Q  265 gtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcatt 342  Q
    |||||||||||| ||||||| | ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  32724979 gtgcatgagatcgttatttagtgaactcagagagctggcttgatgcaatttctaccttgattacatatttaaatcatt 32725056  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 32718419 - 32718472
Alignment:
Q  134 tctcaccttgttgagtgttagtgttgatagacatcttattcagattttgtttag 187  Q
    |||||||||||| |||||||||| |||||||||||||||||| |||||||||||    
T  32718419 tctcaccttgtttagtgttagtggtgatagacatcttattcacattttgtttag 32718472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 32724824 - 32724877
Alignment:
Q  134 tctcaccttgttgagtgttagtgttgatagacatcttattcagattttgtttag 187  Q
    |||||||||||| |||||||||| |||||||||||||||||| |||||||||||    
T  32724824 tctcaccttgtttagtgttagtggtgatagacatcttattcacattttgtttag 32724877  T

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Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 263 - 347
Target Start/End: Complemental strand, 14903523 - 14903439
Alignment:
Q  263 ttgtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcattgaata 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14903523 ttgtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcactgaata 14903439  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 14903720 - 14903644
Alignment:
Q  44 gttggttttggagtcagctttcttgtattcctctgtgtagacgttttatatcaagttgaactctattctaaaatttc 120  Q
    |||||||||||||||| ||||||||||||||||| ||||||   |||||||||||||||||| ||||||||||||||    
T  14903720 gttggttttggagtcaactttcttgtattcctctatgtagattatttatatcaagttgaactttattctaaaatttc 14903644  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 2999378 - 2999461
Alignment:
Q  9 gagatgaagatgtagagctaggattttagtagccggttggttttggagtcagctttcttgtattcctctgtgtagacgttttat 92  Q
    |||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2999378 gagatgaagatgtagagctacgagtttagtagtcagttggttttggagtcagctttcttgtattcctctgtgtagacgttttat 2999461  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 263 - 347
Target Start/End: Original strand, 2999658 - 2999748
Alignment:
Q  263 ttgtgcatgagatcattattt------atttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcattgaata 347  Q
    |||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2999658 ttgtgcatgagatcattattttattttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcattgaata 2999748  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 7432420 - 7432467
Alignment:
Q  300 tagcttgatgcaatttctagcttcattacatatttaaatcattgaata 347  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  7432420 tagcttgatgcaatttgtagcttcattacatattgaaatcattgaata 7432467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 2999481 - 2999553
Alignment:
Q  122 attcttaaaatatctcaccttgttgagtgttagtgttg-------atagacatcttattcagattttgtttag 187  Q
    ||||| ||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||    
T  2999481 attctcaaaatatctcaccttgttgagtgttagtggtgaatggtaatagacatcttattcagattttgtttag 2999553  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 3000803 - 3000850
Alignment:
Q  363 gtttccaacactagttatacaagaagagaagcgtgttcgctttgtggt 410  Q
    |||||||  |||||||||||||||||||||||| ||||||||||||||    
T  3000803 gtttccagaactagttatacaagaagagaagcgcgttcgctttgtggt 3000850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 39851723 - 39851767
Alignment:
Q  301 agcttgatgcaatttctagcttcattacatatttaaatcattgaa 345  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||||    
T  39851723 agcttgatgtaatttttagcttcattacatagttaaatcattgaa 39851767  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 44476235 - 44476279
Alignment:
Q  301 agcttgatgcaatttctagcttcattacatatttaaatcattgaa 345  Q
    |||| |||||||||| ||||| ||||||||| |||||||||||||    
T  44476235 agctggatgcaatttgtagctgcattacatagttaaatcattgaa 44476279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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