View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19179_low_13 (Length: 348)
Name: NF19179_low_13
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19179_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 49871124 - 49871443
Alignment:
| Q |
18 |
accgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatgctttgcggcaccggctgagttctcgaatccgacg |
117 |
Q |
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| T |
49871124 |
accgttcatttcacagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatgctttgcggcaccggctgagttctcgaatccgacg |
49871223 |
T |
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| Q |
118 |
ttaaaggccgtgaaatgggcagagttcacacctgtcaaattaataacaaatcgatcattacaacttacaacttaggaacagatgctaaatattaaacatt |
217 |
Q |
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| T |
49871224 |
ttaaaggccgtgaaatgggcagagttcacacctgtcaa-ttaataacaaatcgatcattacaacttacaacttaggaacagatgctaaatattaatcatt |
49871322 |
T |
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| Q |
218 |
gcattagtaacttactgaatgttgcggtattgtaagtctgcacaccatcaccatagcttttgctaccagtaaatatggtctttttgggaccatcaccaat |
317 |
Q |
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| T |
49871323 |
gcattagtaacttactgaatgttgcggtattgtaagtctgcacaccatcaccatagcttttgctaccagtaaatatggtctttttgggaccatcaccaat |
49871422 |
T |
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| Q |
318 |
aatagtaacatggtccctatg |
338 |
Q |
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| T |
49871423 |
aatagtaacatggtccctatg |
49871443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 49865187 - 49865511
Alignment:
| Q |
18 |
accgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatgctttgcggcaccggctgagttctcgaatccgacg |
117 |
Q |
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| T |
49865187 |
accgtccatttgacagttgtagaacaatgctttgtctgctgttacacggagggccactgcttggtgctttgcggcaccggctgagttctcaaatccgacg |
49865286 |
T |
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| Q |
118 |
ttaaaggccgtgaaatgggcagagttcacacctgtcaaattaataacaaatcgatcattacaacttacaacttaggaacagatgctaaatattaaacatt |
217 |
Q |
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| T |
49865287 |
ttcaaggcggtgaaatgggcagagttcacacctg-ccaattaataacaacccgatatacacaacttacaa-ttttttagagatcc---atattaaacatt |
49865381 |
T |
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| Q |
218 |
gcat----------tagtaacttactgaatgttgcggtattgtaagtctgcacaccatcaccatagcttttgctaccagtaaatatggtctttttgggac |
307 |
Q |
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| T |
49865382 |
gcattaaaattgagtagtaacttaccgaatgttgcggtattgtaagtctgcacaccatcagcatagcttttgctgccagtaaatatggtctttgtgggac |
49865481 |
T |
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| Q |
308 |
catcaccaataatagtaacatggtccctat |
337 |
Q |
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| T |
49865482 |
catcgccaataatagtaacatggtccctat |
49865511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 13960384 - 13960326
Alignment:
| Q |
25 |
atttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatg |
83 |
Q |
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|||| |||||||||||| | |||||||||||||||||| ||||| || ||||||||||| |
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| T |
13960384 |
atttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatg |
13960326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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