View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19179_low_14 (Length: 345)

Name: NF19179_low_14
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19179_low_14
NF19179_low_14
[»] chr6 (10 HSPs)
chr6 (6-340)||(12219193-12219530)
chr6 (1-61)||(12219116-12219176)
chr6 (6-61)||(12219019-12219074)
chr6 (182-258)||(12163265-12163341)
chr6 (31-73)||(12179189-12179231)
chr6 (15-61)||(12218956-12219002)
chr6 (24-61)||(12163959-12163996)
chr6 (6-58)||(12163179-12163231)
chr6 (9-61)||(12163281-12163333)
chr6 (6-58)||(12163626-12163678)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 6 - 340
Target Start/End: Original strand, 12219193 - 12219530
Alignment:
Q  6 ccaaagaagccctacaaatacccatcacctccaccaccaatttacaagtacaagtcgccacccccaccttataagtacccatctccacaacaacctctac 105  Q
    ||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12219193 ccaaagaagacctacaaatatccatcacctccaccaccagtttacaagtacaagtcgtcacccccaccttataagtacccatctccacaacaacctctac 12219292  T
Q  106 aactatcgcaacgaactacctattactattacaagtcaccaccaccaccacataggaagccctagaaataccaatttcctccaccaccacctaagaagca 205  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12219293 aactatcgcaacaaactaccaattactattacaagtcaccaccaccgccacataggaagccctagaaataccaatttcctccaccaccacctaagaagca 12219392  T
Q  206 atacaagt---attcatctcaaccaccatcggtctacaagtacaagtcatctcctcgtcctcaccactactaaatagttagtagtatagctcttagtaca 302  Q
    ||||||||   ||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||    
T  12219393 atacaagtataattcatctcaaccaccaccggtctacaagtacaagtcatttcctcgccctcaccactactaaatagttagtagtatagcccttagtaca 12219492  T
Q  303 tacggtatgcctcttcatctctatatgattcattttat 340  Q
    |||||||||| ||||||| ||||||| ||| |||||||    
T  12219493 tacggtatgcttcttcatatctatattatttattttat 12219530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12219116 - 12219176
Alignment:
Q  1 cgccgccaaagaagccctacaaatacccatcacctccaccaccaatttacaagtacaagtc 61  Q
    |||| |||||||||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  12219116 cgccaccaaagaagccctacaaatatccgtcacctccaccaccagtttacaagtacaagtc 12219176  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 12219019 - 12219074
Alignment:
Q  6 ccaaagaagccctacaaatacccatcacctccaccaccaatttacaagtacaagtc 61  Q
    |||||||||||||||||||| |||||||||||||||||||| || | |||||||||    
T  12219019 ccaaagaagccctacaaatatccatcacctccaccaccaatatatatgtacaagtc 12219074  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 12163265 - 12163341
Alignment:
Q  182 tcctccaccaccacctaagaagcaatacaagtattcatctcaaccaccatcggtctacaagtacaagtcatctcctc 258  Q
    |||||| |||||||| ||||||| ||| || ||| |||||| ||||||| | || ||||||||||||||| ||||||    
T  12163265 tcctcctccaccaccgaagaagccatataaatatccatctccaccaccaccagtttacaagtacaagtcacctcctc 12163341  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 12179189 - 12179231
Alignment:
Q  31 cacctccaccaccaatttacaagtacaagtcgccacccccacc 73  Q
    |||||||||||||| |||||||||||||||| ||||| |||||    
T  12179189 cacctccaccaccagtttacaagtacaagtccccacctccacc 12179231  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 12218956 - 12219002
Alignment:
Q  15 ccctacaaatacccatcacctccaccaccaatttacaagtacaagtc 61  Q
    ||||||||||| |||||||||||||||| ||| || |||||||||||    
T  12218956 ccctacaaatatccatcacctccaccacaaatatataagtacaagtc 12219002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 12163959 - 12163996
Alignment:
Q  24 tacccatcacctccaccaccaatttacaagtacaagtc 61  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  12163959 tacccatcaccaccaccaccagtttacaagtacaagtc 12163996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 12163179 - 12163231
Alignment:
Q  6 ccaaagaagccctacaaatacccatcacctccaccaccaatttacaagtacaa 58  Q
    ||||||||||| ||||||||| | || |||||||| ||| |||||||||||||    
T  12163179 ccaaagaagccatacaaatacgcttctcctccacctccagtttacaagtacaa 12163231  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 12163281 - 12163333
Alignment:
Q  9 aagaagccctacaaatacccatcacctccaccaccaatttacaagtacaagtc 61  Q
    |||||||| || ||||| ||||| || ||||||||| ||||||||||||||||    
T  12163281 aagaagccatataaatatccatctccaccaccaccagtttacaagtacaagtc 12163333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 12163626 - 12163678
Alignment:
Q  6 ccaaagaagccctacaaatacccatcacctccaccaccaatttacaagtacaa 58  Q
    ||||| ||||| || ||||||||||| || ||||||||| |||||||||||||    
T  12163626 ccaaaaaagccatataaatacccatctcccccaccaccagtttacaagtacaa 12163678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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