View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19179_low_18 (Length: 320)

Name: NF19179_low_18
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19179_low_18
NF19179_low_18
[»] chr6 (13 HSPs)
chr6 (40-305)||(33638060-33638325)
chr6 (1-106)||(33638341-33638446)
chr6 (38-106)||(26499720-26499788)
chr6 (38-106)||(30355490-30355558)
chr6 (38-97)||(15575106-15575165)
chr6 (54-106)||(24618056-24618108)
chr6 (38-97)||(17860322-17860381)
chr6 (41-106)||(24507319-24507383)
chr6 (71-107)||(12972291-12972327)
chr6 (54-106)||(16439631-16439683)
chr6 (54-106)||(14924307-14924359)
chr6 (54-106)||(26512668-26512720)
chr6 (54-106)||(26517784-26517836)
[»] chr3 (19 HSPs)
chr3 (38-106)||(19219084-19219152)
chr3 (49-100)||(10341966-10342017)
chr3 (38-97)||(25883285-25883344)
chr3 (38-100)||(18474349-18474411)
chr3 (38-100)||(19542997-19543059)
chr3 (38-106)||(19263777-19263848)
chr3 (57-106)||(21829025-21829074)
chr3 (41-96)||(1475156-1475211)
chr3 (43-106)||(11475020-11475083)
chr3 (41-106)||(16970635-16970700)
chr3 (38-94)||(11521350-11521406)
chr3 (53-105)||(23908159-23908211)
chr3 (38-106)||(25919345-25919412)
chr3 (38-105)||(5632416-5632482)
chr3 (48-106)||(28422626-28422683)
chr3 (38-106)||(8402424-8402493)
chr3 (53-106)||(26418893-26418946)
chr3 (38-93)||(18065982-18066038)
chr3 (38-106)||(30493138-30493206)
[»] chr7 (21 HSPs)
chr7 (38-106)||(29544693-29544761)
chr7 (38-106)||(21545700-21545768)
chr7 (40-106)||(30405767-30405833)
chr7 (57-106)||(12358655-12358704)
chr7 (38-105)||(20017128-20017194)
chr7 (41-106)||(7494870-7494934)
chr7 (38-106)||(10670448-10670515)
chr7 (38-106)||(23125074-23125142)
chr7 (38-97)||(7493495-7493554)
chr7 (38-97)||(20446384-20446443)
chr7 (53-90)||(8308924-8308961)
chr7 (49-106)||(9801759-9801815)
chr7 (41-102)||(20470686-20470747)
chr7 (54-106)||(14649669-14649721)
chr7 (38-106)||(18496738-18496806)
chr7 (38-106)||(24596877-24596945)
chr7 (38-97)||(22067676-22067735)
chr7 (38-96)||(315356-315414)
chr7 (54-106)||(1074626-1074678)
chr7 (54-106)||(5312675-5312727)
chr7 (49-97)||(21471978-21472026)
[»] chr5 (20 HSPs)
chr5 (38-106)||(18178275-18178343)
chr5 (38-102)||(19763759-19763823)
chr5 (43-106)||(7742748-7742811)
chr5 (54-106)||(11274219-11274271)
chr5 (38-106)||(16622550-16622617)
chr5 (38-106)||(18452685-18452753)
chr5 (38-106)||(25594565-25594633)
chr5 (38-106)||(26329943-26330010)
chr5 (38-106)||(30072289-30072357)
chr5 (38-105)||(16634221-16634288)
chr5 (43-97)||(22229986-22230040)
chr5 (41-106)||(17027701-17027765)
chr5 (54-106)||(11997782-11997834)
chr5 (49-97)||(12339899-12339947)
chr5 (56-100)||(20694819-20694863)
chr5 (31-98)||(24841935-24842001)
chr5 (54-104)||(17695352-17695402)
chr5 (38-107)||(25367766-25367834)
chr5 (38-106)||(23157677-23157745)
chr5 (62-106)||(26070647-26070691)
[»] chr1 (26 HSPs)
chr1 (38-106)||(11769867-11769935)
chr1 (38-106)||(25494362-25494430)
chr1 (38-107)||(26854193-26854262)
chr1 (38-102)||(30675662-30675725)
chr1 (38-106)||(52271118-52271186)
chr1 (41-106)||(19257682-19257745)
chr1 (48-106)||(25727792-25727850)
chr1 (48-106)||(25736200-25736258)
chr1 (38-106)||(15298744-15298811)
chr1 (38-106)||(21548821-21548889)
chr1 (39-106)||(9328341-9328407)
chr1 (38-97)||(12423788-12423847)
chr1 (43-106)||(18300881-18300944)
chr1 (38-104)||(50047350-50047416)
chr1 (41-97)||(23519645-23519701)
chr1 (38-106)||(25373919-25373987)
chr1 (54-106)||(26102230-26102282)
chr1 (54-106)||(27461070-27461122)
chr1 (41-97)||(30781942-30781998)
chr1 (39-106)||(9353186-9353252)
chr1 (40-103)||(25730446-25730509)
chr1 (54-105)||(31313726-31313777)
chr1 (38-106)||(23223586-23223655)
chr1 (38-107)||(23505929-23505997)
chr1 (62-106)||(15416870-15416914)
chr1 (62-106)||(31319508-31319552)
[»] chr8 (23 HSPs)
chr8 (41-106)||(30850976-30851041)
chr8 (42-106)||(28291978-28292042)
chr8 (38-106)||(29291943-29292011)
chr8 (38-107)||(14424686-14424755)
chr8 (54-106)||(6888082-6888134)
chr8 (38-106)||(16052150-16052218)
chr8 (43-106)||(13583398-13583461)
chr8 (38-97)||(16054476-16054535)
chr8 (38-93)||(28902275-28902330)
chr8 (38-107)||(28901223-28901291)
chr8 (38-106)||(5153931-5153999)
chr8 (38-97)||(13081808-13081867)
chr8 (51-106)||(24696755-24696810)
chr8 (41-106)||(31436646-31436708)
chr8 (48-106)||(12956654-12956712)
chr8 (48-106)||(28859122-28859180)
chr8 (41-106)||(11310132-11310196)
chr8 (38-106)||(11437593-11437661)
chr8 (38-106)||(32239461-32239529)
chr8 (40-107)||(22894407-22894473)
chr8 (39-105)||(27097676-27097740)
chr8 (38-106)||(30543934-30544003)
chr8 (38-106)||(5570013-5570081)
[»] chr4 (19 HSPs)
chr4 (41-106)||(31859777-31859842)
chr4 (38-106)||(33519203-33519271)
chr4 (38-105)||(5906636-5906703)
chr4 (38-106)||(7024092-7024160)
chr4 (38-106)||(12111201-12111268)
chr4 (38-106)||(17187346-17187414)
chr4 (38-104)||(21077408-21077474)
chr4 (64-106)||(26159929-26159971)
chr4 (38-106)||(34864169-34864236)
chr4 (31-106)||(19601972-19602046)
chr4 (38-106)||(23353794-23353859)
chr4 (38-82)||(1695720-1695764)
chr4 (38-106)||(15192377-15192444)
chr4 (54-106)||(46647368-46647420)
chr4 (48-103)||(47024649-47024703)
chr4 (48-98)||(13064607-13064657)
chr4 (65-106)||(22119794-22119835)
chr4 (73-106)||(29437644-29437677)
chr4 (38-106)||(27302951-27303018)
[»] chr2 (16 HSPs)
chr2 (39-106)||(18818875-18818942)
chr2 (38-106)||(14921912-14921980)
chr2 (38-106)||(31262170-31262238)
chr2 (38-104)||(31274131-31274197)
chr2 (38-95)||(1733275-1733332)
chr2 (38-95)||(16593624-16593681)
chr2 (38-107)||(27417136-27417205)
chr2 (41-105)||(1732725-1732789)
chr2 (54-106)||(17152327-17152379)
chr2 (38-105)||(18236176-18236243)
chr2 (38-97)||(30998953-30999012)
chr2 (41-106)||(32619799-32619863)
chr2 (41-89)||(22525696-22525744)
chr2 (38-105)||(24188144-24188210)
chr2 (38-97)||(25474219-25474278)
chr2 (38-103)||(17415037-17415101)
[»] scaffold0171 (2 HSPs)
scaffold0171 (38-107)||(21570-21639)
scaffold0171 (43-106)||(6369-6431)
[»] scaffold0650 (1 HSPs)
scaffold0650 (39-106)||(5644-5710)
[»] scaffold0011 (1 HSPs)
scaffold0011 (38-104)||(228060-228125)
[»] scaffold0190 (1 HSPs)
scaffold0190 (38-102)||(11571-11635)
[»] scaffold0188 (1 HSPs)
scaffold0188 (40-106)||(26830-26896)
[»] scaffold0337 (1 HSPs)
scaffold0337 (41-106)||(1982-2046)
[»] scaffold0362 (1 HSPs)
scaffold0362 (38-99)||(7799-7860)
[»] scaffold0065 (1 HSPs)
scaffold0065 (41-106)||(12418-12482)
[»] scaffold0185 (1 HSPs)
scaffold0185 (31-95)||(2684-2748)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 40 - 305
Target Start/End: Complemental strand, 33638325 - 33638060
Alignment:
Q  40 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatcacaagttttgaaatttaaacgaattttcaatag 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33638325 gaattttattcactttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcatatcacaagttttgaaatttaaacgaattttcaatag 33638226  T
Q  140 atggaaactacaggaactcaannnnnnncattggttttggctttagatgtgatgggtcagaggatttaggaaggtttgaaaaccatgctcggagcttaaa 239  Q
    ||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33638225 atggaaactacaggatctcaatttttttcattggttttggctttagatgtgatgggtcagaggatttaggaaggtttgaaaaccatgctcggagcttaaa 33638126  T
Q  240 attgaagtcgtatatcacaagtaatcaccaatatatgcattaaagctaattttctctccaagtttg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33638125 attgaagtcgtatatcacaagtaatcaccaatatatgcattaaagctaattttctctccaagtttg 33638060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 33638341 - 33638446
Alignment:
Q  1 aatatttaataataaattcaatagatgcatacatgacatgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33638341 aatatttaataataaattcaatagatgcatacatgacacaaattttattcactttgtattatcttcaaagaccttataagaaccattgatcttcaatctt 33638440  T
Q  101 catatc 106  Q
    ||||||    
T  33638441 catatc 33638446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 26499720 - 26499788
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  26499720 atgaattttctttactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcatatc 26499788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 30355558 - 30355490
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  30355558 atgaattttattcactttttattgtcttcaaaaaccttctaagaacgattgatcttcaatcttcatatc 30355490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 15575165 - 15575106
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||    
T  15575165 atgaattttcttcactttgtattgtcttcaacgaccttctaagaacccttgatcttcaat 15575106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 24618108 - 24618056
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| |||| ||||| |||||||||| |||||||||||||||||||||||    
T  24618108 ttgtattgtctttaaagatcttctaagaatcattgatcttcaatcttcatatc 24618056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 17860322 - 17860381
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    ||||||||| ||||||||||||| ||| |||| ||||||||||||||||||  |||||||    
T  17860322 atgaattttcttcactttgtattgtctacaaaaaccttctaagaaccattgtccttcaat 17860381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 24507319 - 24507383
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| ||||||||||||| |||||| | | ||||||| |||||||| |||||||||||||||||    
T  24507319 aattttcttcactttgtattttcttcataaaacttctaacaaccattg-tcttcaatcttcatatc 24507383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 12972291 - 12972327
Alignment:
Q  71 accttctaagaaccattgatcttcaatcttcatatca 107  Q
    |||||| ||||||||||||||||||||||||||||||    
T  12972291 accttcaaagaaccattgatcttcaatcttcatatca 12972327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 16439683 - 16439631
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| ||||||||  | |||||||||||||||||||||| ||||||||||    
T  16439683 ttgtattttcttcaaaaccattctaagaaccattgatcttcattcttcatatc 16439631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 14924307 - 14924359
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| |||||||| || ||| | |||||||||||||||||| ||||||||    
T  14924307 ttgtattgtcttcaaaaacattccatgaaccattgatcttcaattttcatatc 14924359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 26512668 - 26512720
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| | |||| ||||||| |||||||||||||||||||  |||||||||    
T  26512668 ttgtattgtgttcacagaccttttaagaaccattgatcttcatccttcatatc 26512720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 26517784 - 26517836
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| | |||| ||||||| |||||||||||||||||||  |||||||||    
T  26517784 ttgtattgtgttcacagaccttttaagaaccattgatcttcatccttcatatc 26517836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 19219084 - 19219152
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  19219084 atgaattttattcactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcatatc 19219152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 10342017 - 10341966
Alignment:
Q  49 tcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatctt 100  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  10342017 tcactttgtattgtcttcaaaaaccttctaagaaccactgatcttcaatctt 10341966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 25883344 - 25883285
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    ||||||||| ||||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  25883344 atgaattttcttcactttgtattgtcttcaacaaccttctaagaacccttgatcttcaat 25883285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 18474411 - 18474349
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatctt 100  Q
    ||||||||| ||||||||||||| |||||||| |||||||||| ||||||||  |||||||||    
T  18474411 atgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaaattcaatctt 18474349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 19542997 - 19543059
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatctt 100  Q
    ||||||||| ||||||||||||| |||||||| ||||||||||||| |||||  |||||||||    
T  19542997 atgaattttcttcactttgtattgtcttcaaataccttctaagaactattgaaattcaatctt 19543059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 19263777 - 19263848
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaaga---ccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||||||||||| |||| ||| |   ||||||| |||||||||||||||||||||||||||    
T  19263777 atgaattttcttcactttgtattgtcttaaaaaaaaaccttctatgaaccattgatcttcaatcttcatatc 19263848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 21829025 - 21829074
Alignment:
Q  57 tattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||| ||||||||||||||| | |||||||||||||||||||||||||||    
T  21829025 tattgtcttcaaagaccttcgatgaaccattgatcttcaatcttcatatc 21829074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 1475156 - 1475211
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaa 96  Q
    |||||| |||||||||||||||||||||  |||||||||||||  |||||||||||    
T  1475156 aattttcttcactttgtattatcttcaataaccttctaagaactcttgatcttcaa 1475211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 11475083 - 11475020
Alignment:
Q  43 ttttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||| ||||||||||||| |||||||| | ||||||||||||||| ||||| |||| |||||||    
T  11475083 tttttttcactttgtattgtcttcaaatatcttctaagaaccatttatcttgaatcctcatatc 11475020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 16970700 - 16970635
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| ||||  ||||||| |||||||| |||||||||||||| ||| ||||||| |||||||||    
T  16970700 aattttcttcatcttgtattttcttcaaaaaccttctaagaaccgttggtcttcaaacttcatatc 16970635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 11521406 - 11521350
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttc 94  Q
    ||||||||| ||| |||||||||||||||||  ||||||||| |||| |||||||||    
T  11521406 atgaattttcttcgctttgtattatcttcaacaaccttctaacaacccttgatcttc 11521350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 23908159 - 23908211
Alignment:
Q  53 tttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatat 105  Q
    |||||||| |||||||| || |||||| ||||||||||||| |||||||||||    
T  23908159 tttgtattgtcttcaaaaactttctaaaaaccattgatcttaaatcttcatat 23908211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 25919345 - 25919412
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||||  |||||||| |||||||||||| || |||||| || | |||||||||||||||||||||    
T  25919345 atgaattttcgtcactttgcattatcttcaaaaac-ttctaaaaatcgttgatcttcaatcttcatatc 25919412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 5632416 - 5632482
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatat 105  Q
    ||||||||| |||| ||| ||||||||||||| ||||| |||||||| ||| ||||||||||| ||||    
T  5632416 atgaattttcttcaatttttattatcttcaaataccttataagaaccgttg-tcttcaatctttatat 5632482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 28422683 - 28422626
Alignment:
Q  48 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||||||| |||||||| |||||||||  | |||||| ||||||||||||||||    
T  28422683 ttcactttgtattgtcttcaaataccttctaa-catcattgaacttcaatcttcatatc 28422626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 8402424 - 8402493
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagacctt-ctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| || |||||||| |||| |||||||| ||||| | ||||||||| | |||||||||||||||||    
T  8402424 atgaatgttcttcactttatattttcttcaaatacctttcgaagaaccatagttcttcaatcttcatatc 8402493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 26418946 - 26418893
Alignment:
Q  53 tttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||| |||| ||| ||||||||||||||||  ||||| ||||||||||||    
T  26418946 tttgtattttctttaaaaaccttctaagaaccatcaatctttaatcttcatatc 26418893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 18066038 - 18065982
Alignment:
Q  38 atgaattttattcactttgtattatcttc-aaagaccttctaagaaccattgatctt 93  Q
    ||||||||| ||||||||||||| ||||| ||| || ||||||||||||||| ||||    
T  18066038 atgaattttcttcactttgtattttcttcaaaaaactttctaagaaccattggtctt 18065982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 30493138 - 30493206
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| |||||||| |||  ||||||||   |||||||||||| || ||||| ||||||||||||    
T  30493138 atgaattttcttcactttatatcgtcttcaaatgtcttctaagaaccgttaatctttaatcttcatatc 30493206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 29544761 - 29544693
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  29544761 atgaattttcttcactttgtattgtcttcaaaaaccttctaagaatcattgatcttcaatcttcatatc 29544693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 21545700 - 21545768
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| |||||||| |||| |||||||| || |||||||||||||||||||||||||||||||||    
T  21545700 atgaattttcttcactttttattgtcttcaaatactttctaagaaccattgatcttcaatcttcatatc 21545768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 30405833 - 30405767
Alignment:
Q  40 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||| ||||||||||||||| | |||||| |||||||||||| |||||| ||||||||||||||||    
T  30405833 gaattgtattcactttgtattgtattcaaataccttctaagaatcattgaacttcaatcttcatatc 30405767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 12358655 - 12358704
Alignment:
Q  57 tattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  12358655 tattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcatatc 12358704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 20017194 - 20017128
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatat 105  Q
    ||||||||| ||||||||||||| |||||||  |||||||||||||||||||  ||||||||||||||    
T  20017194 atgaattttcttcactttgtattgtcttcaagaaccttctaagaaccattga-gttcaatcttcatat 20017128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 7494934 - 7494870
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| ||||||||||||| ||||||  |||||||||||||||||| | ||||||||||||||||    
T  7494934 aattttcttcactttgtattgtcttcatggaccttctaagaaccatt-aacttcaatcttcatatc 7494870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 10670448 - 10670515
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||| |||||||||||||||||| ||||  || ||||||||||||||||||| |||| |||||||||||    
T  10670448 atgatttttattcactttgtattgtcttagaaaaccttctaagaaccattga-cttcgatcttcatatc 10670515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 23125142 - 23125074
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||||||||||| |||| ||  | ||| ||||||||||||| ||||||||||||||||    
T  23125142 atgaattttcttcactttgtattgtctttaagaatcttataagaaccattgaacttcaatcttcatatc 23125074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 7493554 - 7493495
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    ||||||||| |||| ||||||||||||||||  ||||| |||||||| ||||||||||||    
T  7493554 atgaatttttttcattttgtattatcttcaataaccttttaagaacccttgatcttcaat 7493495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 20446443 - 20446384
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    |||| |||| ||||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  20446443 atgattttttttcactttgtattgtcttcaacaaccttctaagaacccttgatcttcaat 20446384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 8308924 - 8308961
Alignment:
Q  53 tttgtattatcttcaaagaccttctaagaaccattgat 90  Q
    |||||||| |||||||||||||||||||||||||||||    
T  8308924 tttgtattgtcttcaaagaccttctaagaaccattgat 8308961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 9801759 - 9801815
Alignment:
Q  49 tcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||||||| |||| ||| ||||| ||||||||||||| ||||||||||||||||    
T  9801759 tcactttgtattttctttaaaaaccttttaagaaccattga-cttcaatcttcatatc 9801815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 20470686 - 20470747
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttca 102  Q
    |||||| |||| |||||||| |||||||  ||||||||||||||||||| ||||||| ||||    
T  20470686 aattttcttcattttgtattgtcttcaagaaccttctaagaaccattgaacttcaatattca 20470747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 14649721 - 14649669
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| |||||||| ||||||||| ||||||||||||||| | ||||||||    
T  14649721 ttgtattgtcttcaaaaaccttctaataaccattgatcttcattattcatatc 14649669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 18496806 - 18496738
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||  ||||||| |||||||  || ||||||||||||||  |||||||||||||||||    
T  18496806 atgaattttcttcatcttgtattttcttcaacaacattctaagaaccattattcttcaatcttcatatc 18496738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 24596877 - 24596945
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||||||||||| ||||||||   |||||| |||||| ||| |||||||||| |||||    
T  24596877 atgaattttcttcactttgtattgtcttcaaatttcttctatgaaccactgaacttcaatctttatatc 24596945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 22067676 - 22067735
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    ||||||| | ||||||||||||| |||||||  |||||||||||||| ||||| ||||||    
T  22067676 atgaattcttttcactttgtattgtcttcaacaaccttctaagaacccttgattttcaat 22067735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 315414 - 315356
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaa 96  Q
    ||||||||||||||||||||||| |||||||  |||||| ||||||  ||| |||||||    
T  315414 atgaattttattcactttgtattgtcttcaacaaccttcaaagaactgttgttcttcaa 315356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 1074678 - 1074626
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| |||||||  ||||| |||||||||||| |||||||| ||||||||    
T  1074678 ttgtattgtcttcaacaaccttttaagaaccattggtcttcaattttcatatc 1074626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 5312675 - 5312727
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| |||||||| | ||||||||||||||| || ||||||| |||||||    
T  5312675 ttgtattgtcttcaaaaatcttctaagaaccatttatgttcaatcctcatatc 5312727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 21472026 - 21471978
Alignment:
Q  49 tcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    |||||||||||| |||||||  |||||||||||||| || |||||||||    
T  21472026 tcactttgtattttcttcaataaccttctaagaaccctttatcttcaat 21471978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 18178343 - 18178275
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||    
T  18178343 atgaattttattcaatttgtattatcttcaaagaccttccaagaacaattggtcttcaatcttcatatc 18178275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 19763759 - 19763823
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttca 102  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  19763759 atgaattttcttcactttgtattatcttcaaaaaccttctaagaacccttgatcttcaatcttca 19763823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 7742748 - 7742811
Alignment:
Q  43 ttttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  7742748 ttttcttcactttgtattgtcttcaaagaccttctaagaaccattgatcttcagtcttcatatc 7742811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 11274219 - 11274271
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  11274219 ttgtattgtcttcaaagaccttctaagaaccattggtcttcaatcttcatatc 11274271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 16622550 - 16622617
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| |||| |||||||| |||||||| ||||||||||||||| || |||||||||||||||||    
T  16622550 atgaattttcttcaatttgtattgtcttcaaa-accttctaagaaccactggtcttcaatcttcatatc 16622617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 18452685 - 18452753
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||||||||||| | || ||| ||||| ||||||||||||||||||||| ||||||||    
T  18452685 atgaattttcttcactttgtattgttttaaaaaaccttataagaaccattgatcttcaattttcatatc 18452753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 25594565 - 25594633
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||||||| ||||||| |||| ||||||||| | |||||||| |||||||||||||||    
T  25594565 atgaattttcttcactttgcattatctacaaaaaccttctaatatccattgatattcaatcttcatatc 25594633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 26329943 - 26330010
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||||||||||| |||| ||| |||||||||| |||||||| ||||||||||||||||    
T  26329943 atgaattttcttcactttgtattgtcttaaaaaaccttctaaggaccattga-cttcaatcttcatatc 26330010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 30072357 - 30072289
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||| ||| ||||||||||||| |||| ||| ||||| ||||||||||| ||||||||||||||||||    
T  30072357 atgaaatttcttcactttgtattgtctttaaaaaccttttaagaaccattaatcttcaatcttcatatc 30072289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 16634288 - 16634221
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatat 105  Q
    ||||||||| ||||  ||||||| |||||||| |||||||||||||||||| ||||||| ||||||||    
T  16634288 atgaatttttttcatcttgtattttcttcaaaaaccttctaagaaccattggtcttcaaacttcatat 16634221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 22230040 - 22229986
Alignment:
Q  43 ttttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    |||| ||||||| |||||||||||||  |||||||||||||| ||||||||||||    
T  22230040 ttttcttcacttggtattatcttcaacaaccttctaagaacccttgatcttcaat 22229986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 17027765 - 17027701
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| ||||||||||||| |||||||  |||||||||||| |||| | ||||||||||||||||    
T  17027765 aattttcttcactttgtattgtcttcaagaaccttctaagaagcatt-aacttcaatcttcatatc 17027701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 11997782 - 11997834
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||||||| ||| ||||||||| || |||||||||||| ||||||||||    
T  11997782 ttgtattatctttaaaaaccttctaaaaatcattgatcttcattcttcatatc 11997834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 12339899 - 12339947
Alignment:
Q  49 tcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    |||||||||||| ||||||| ||||||||||||||| ||||| ||||||    
T  12339899 tcactttgtattgtcttcaacgaccttctaagaacccttgattttcaat 12339947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 20694863 - 20694819
Alignment:
Q  56 gtattatcttcaaagaccttctaagaaccattgatcttcaatctt 100  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||||    
T  20694863 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 20694819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 24842001 - 24841935
Alignment:
Q  31 acatgacatgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 98  Q
    |||||| ||||||||| |||| ||||| || ||||||||  |||||||||||||||||| ||||||||    
T  24842001 acatgaaatgaattttcttcattttgtgttgtcttcaaaatccttctaagaaccattga-cttcaatc 24841935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 17695352 - 17695402
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcata 104  Q
    ||||||| |||||||| ||||||||| ||||||||||||||| | ||||||    
T  17695352 ttgtattgtcttcaaaaaccttctaataaccattgatcttcattattcata 17695402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 25367834 - 25367766
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatca 107  Q
    ||||||||| |||||||| |||| ||||||||   ||||||||||||||||| ||| ||||||| |||||    
T  25367834 atgaattttcttcactttctatt-tcttcaaatgtcttctaagaaccattgaactttaatcttcgtatca 25367766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 23157677 - 23157745
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||| ||| |||||||| | || |||| ||| ||||| ||||||||||||| |||||||||| |||||    
T  23157677 atgaactttcttcactttctgttgtctttaaataccttataagaaccattgaacttcaatcttaatatc 23157745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 26070691 - 26070647
Alignment:
Q  62 tcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||| ||||| || ||||||| |||||||||||||||||||    
T  26070691 tcttcaaaaaccttatacgaaccatagatcttcaatcttcatatc 26070647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 11769867 - 11769935
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||    
T  11769867 atgaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcatatc 11769935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 25494362 - 25494430
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||    
T  25494362 atgaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcatatc 25494430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 26854193 - 26854262
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatca 107  Q
    ||||||||| ||||||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||    
T  26854193 atgaattttcttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcttcatatca 26854262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 30675725 - 30675662
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttca 102  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  30675725 atgaattttcttcactttgtattatcttcaaaaaccttctaagaaccattgat-ttcaatcttca 30675662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 52271118 - 52271186
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||||||||||| |||||||| |||||||||| |||||||| ||||||||||||||||    
T  52271118 atgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaacttcaatcttcatatc 52271186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 19257682 - 19257745
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| ||||||||||||| ||||||||||||||||||||||  ||||| |||||||||||||||    
T  19257682 aattttcttcactttgtattgtcttcaaagaccttctaagaac--ttgatgttcaatcttcatatc 19257745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 25727792 - 25727850
Alignment:
Q  48 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||| |||||||| |||||| |||||||||||||||||||||||||||||    
T  25727792 ttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttcatatc 25727850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 25736200 - 25736258
Alignment:
Q  48 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||| |||||||| |||||| |||||||||||||||||||||||||||||    
T  25736200 ttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttcatatc 25736258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 15298744 - 15298811
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||||||||| |||||||  ||||||| | ||| ||||||||||||||||| ||||||||||||    
T  15298744 atgaattttattcacattgtattg-cttcaaataacttttaagaaccattgatcttgaatcttcatatc 15298811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 21548889 - 21548821
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||  ||||||||||||||||   ||||||||||||||| | ||||||||||||||||    
T  21548889 atgaatttttttcaacttgtattatcttcaaatgtcttctaagaaccatttagcttcaatcttcatatc 21548821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 9328407 - 9328341
Alignment:
Q  39 tgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||| ||||||| ||||| |||||||| ||||||||||||| |||||  |||||||||||||||    
T  9328407 tgaattttcttcacttagtattgtcttcaaaaaccttctaagaacgattga-attcaatcttcatatc 9328341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 12423788 - 12423847
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    ||||||||  ||||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  12423788 atgaatttccttcactttgtattgtcttcaacaaccttctaagaacctttgatcttcaat 12423847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 18300881 - 18300944
Alignment:
Q  43 ttttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||| |||||| |||||| |||||||| |||||||||||||||||| | || ||||||||||||    
T  18300881 ttttcttcactctgtattgtcttcaaaaaccttctaagaaccattggtatttaatcttcatatc 18300944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 50047416 - 50047350
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcata 104  Q
    ||||||||| |||| |||||||| |||||||  ||||| |||| |||||||||||||||| ||||||    
T  50047416 atgaattttcttcattttgtattgtcttcaataaccttttaagtaccattgatcttcaatattcata 50047350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 23519645 - 23519701
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    |||||| |||||||| |||| |||||||  |||||||||||||||||| ||||||||    
T  23519645 aattttcttcactttctattgtcttcaacaaccttctaagaaccattggtcttcaat 23519701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 25373987 - 25373919
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||  ||||||| |||| ||  |||||||||||||||||| |||| ||||||||||||    
T  25373987 atgaattttcttcatcttgtattgtcttaaacaaccttctaagaaccattggtctttaatcttcatatc 25373919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 26102282 - 26102230
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| |||||||| ||||||||| || |||||||||||| ||||||||||    
T  26102282 ttgtattgtcttcaaaaaccttctaaaaatcattgatcttcattcttcatatc 26102230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 27461070 - 27461122
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| |||||||| ||||| |||||||||||||||||||  |||||||||    
T  27461070 ttgtattgtcttcaaaaaccttttaagaaccattgatcttcatacttcatatc 27461122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 30781998 - 30781942
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    |||||| ||||||||||||| |||||||  ||||| |||||||| ||||||||||||    
T  30781998 aattttcttcactttgtattgtcttcaacaaccttttaagaacccttgatcttcaat 30781942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 9353252 - 9353186
Alignment:
Q  39 tgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||| ||||||| ||||| |||||||| ||||||||||||  |||||  |||||||||||||||    
T  9353252 tgaattttcttcacttagtattttcttcaaaaaccttctaagaatgattga-attcaatcttcatatc 9353186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 25730446 - 25730509
Alignment:
Q  40 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcat 103  Q
    ||||||| ||||||||  ||| || ||||| |||||| |||||||||||||||| |||||||||    
T  25730446 gaattttcttcactttcgattgtcgtcaaaaaccttccaagaaccattgatcttaaatcttcat 25730509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 31313777 - 31313726
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatat 105  Q
    ||||||| |||||||| ||||| |||||| |||||||||||| |||||||||    
T  31313777 ttgtattgtcttcaaaaaccttataagaatcattgatcttcattcttcatat 31313726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 23223655 - 23223586
Alignment:
Q  38 atgaattttattcactttgtattatcttc-aaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||||||||||| ||||| ||| |||||||| |||  |||| | |||||||||||||||    
T  23223655 atgaatttttttcactttgtattgtcttcaaaaaaccttctatgaattattggttttcaatcttcatatc 23223586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 23505997 - 23505929
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatca 107  Q
    ||||||||| ||||||||||||| ||||||||   |||| ||| ||||||||||||||||| | ||||||    
T  23505997 atgaattttcttcactttgtattgtcttcaaatgtcttccaag-accattgatcttcaatcattatatca 23505929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 15416870 - 15416914
Alignment:
Q  62 tcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||| ||| ||||| ||||||||||||||||||| ||||||||||    
T  15416870 tctttaaaaaccttataagaaccattgatcttcattcttcatatc 15416914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 31319508 - 31319552
Alignment:
Q  62 tcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||| | ||||||||||||||||||||||| | ||||||||    
T  31319508 tcttcaaaaaacttctaagaaccattgatcttcattattcatatc 31319552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 30850976 - 30851041
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  30850976 aattttcttcactttgtattatattcaaagacattctaagaaccgttgatcttcaatcttcatatc 30851041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 28291978 - 28292042
Alignment:
Q  42 attttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  28291978 attttcttcattttgtattgtcttcaaagaccttctaagaaccattaatcttcaatcttcatatc 28292042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 29292011 - 29291943
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| |||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||    
T  29292011 atgaatttttttcactttctgttgtcttcaaagaccttctaagaaccattgatcttcaatattcatatc 29291943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 14424686 - 14424755
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatca 107  Q
    ||||||||| ||||| ||| ||| | |||||| ||||||||||||||||||||||||||||||| |||||    
T  14424686 atgaattttcttcacattgaattgtgttcaaaaaccttctaagaaccattgatcttcaatcttcttatca 14424755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 6888082 - 6888134
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||||||||||    
T  6888082 ttgtattgtcttcaaagacattttaagaaccattgatcttcaatcttcatatc 6888134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 16052150 - 16052218
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| |||| |||||||| |||||||| |||||||||||| ||||| |||| ||||||||||||    
T  16052150 atgaattttcttcattttgtattgtcttcaaaaaccttctaagaatcattggtctttaatcttcatatc 16052218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 13583398 - 13583461
Alignment:
Q  43 ttttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||| ||||||||||||| |||||||| | ||||||||||||||||| |||||||| |||||||    
T  13583398 tttttttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcatcatatc 13583461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 16054535 - 16054476
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    ||||||||| ||||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  16054535 atgaattttcttcactttgtattttcttcaacaaccttctaagaacccttgatcttcaat 16054476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 28902330 - 28902275
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatctt 93  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||||||| ||||    
T  28902330 atgaattttattcactttgtattgtcttcaataaccttctaagaaccattggtctt 28902275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 28901223 - 28901291
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatca 107  Q
    ||||||||| ||||||||||||| |||||| | ||||| |||||||||||||  ||||||||||||||||    
T  28901223 atgaattttcttcactttgtattgtcttcagaaaccttataagaaccattga-attcaatcttcatatca 28901291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5153999 - 5153931
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||||||||  || |||| |||||||| |||||| || || |||||||||||||||||||||||    
T  5153999 atgaattttattcatgttatattgtcttcaaaaaccttccaataatcattgatcttcaatcttcatatc 5153931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 13081808 - 13081867
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    ||||||||| |||| |||||||| |||||||  |||||||||||||| ||||||||||||    
T  13081808 atgaattttcttcattttgtattgtcttcaacaaccttctaagaacccttgatcttcaat 13081867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 24696810 - 24696755
Alignment:
Q  51 actttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||||| |||||||| ||||||||||||| | || |||||||||||||||||    
T  24696810 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcatatc 24696755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 31436708 - 31436646
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| ||||||||||||| |||||||| ||||   |||||||||||||| ||||||||||||||    
T  31436708 aatttttttcactttgtattgtcttcaaatacct---aagaaccattgatcgtcaatcttcatatc 31436646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 12956712 - 12956654
Alignment:
Q  48 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||||||||||||| ||| |||||| || ||| ||||||||||| ||||||||||    
T  12956712 ttcactttgtattatcttaaaaaaccttccaaaaacaattgatcttcagtcttcatatc 12956654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 28859122 - 28859180
Alignment:
Q  48 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||| |||| |||||||| ||| ||||||||||||||||||| |||||| |||||    
T  28859122 ttcactttttattgtcttcaaaaaccatctaagaaccattgatctttaatcttgatatc 28859180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 11310132 - 11310196
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| ||||||||||||| | |||||| |||||||||||| |||||| ||| ||||||||||||    
T  11310132 aattttcttcactttgtattgttttcaaaaaccttctaagaatcattga-cttaaatcttcatatc 11310196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 11437661 - 11437593
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| | |||||| |||||| ||||||||   ||||||||||||||||| ||||||| ||||||||    
T  11437661 atgaattatcttcactctgtattgtcttcaaatgtcttctaagaaccattgaacttcaattttcatatc 11437593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 32239529 - 32239461
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| |||||||| |||| |||| ||  ||||| ||| ||||||||| ||||||||||||||||    
T  32239529 atgaattttcttcactttttattgtctttaagaaccttataaaaaccattgaacttcaatcttcatatc 32239461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 22894407 - 22894473
Alignment:
Q  40 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatca 107  Q
    ||||||| ||||||||||||| |||||||| ||| ||||||||| |||||  ||||||||| ||||||    
T  22894407 gaattttcttcactttgtattgtcttcaaaaaccatctaagaacaattga-attcaatctttatatca 22894473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 27097676 - 27097740
Alignment:
Q  39 tgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatat 105  Q
    |||||||| ||||  ||||||| |||||||||||||||||||||| ||| |  ||||||||||||||    
T  27097676 tgaattttcttcaacttgtattgtcttcaaagaccttctaagaactattca--ttcaatcttcatat 27097740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 30544003 - 30543934
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaa-gaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| |||||||| |||| |||| ||| | ||| ||| |||||||||| ||||||||||||||||    
T  30544003 atgaattttcttcactttatattgtctttaaatatcttttaaagaaccattgaacttcaatcttcatatc 30543934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 5570013 - 5570081
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||  ||||||| |||| ||| | |||||||||||||||| |||| || |||||||||    
T  5570013 atgaattttcttcatcttgtattgtctttaaaaagcttctaagaaccattggtctttaaacttcatatc 5570081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 31859777 - 31859842
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||    
T  31859777 aattttcttcactttgtattgtcttcaaataccttctaagaaccattgatcttcaatattcatatc 31859842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 33519271 - 33519203
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||  ||||||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  33519271 atgaattttcttcaacttgtattgtcttcaaagaccttctaagaacgattgatcttcaatcgtcatatc 33519203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 5906636 - 5906703
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatat 105  Q
    ||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||    
T  5906636 atgaattttcttaactttgtattatcttcaaaaaccttctaagaaccattaatcttaaatcttaatat 5906703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 7024092 - 7024160
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||  |||||||||||||||  | |||||||||||||||| |||||||||||||||||    
T  7024092 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 7024160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 12111201 - 12111268
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| |||||||||||||||||| ||| ||||| ||||||||||||| ||||||| ||||||||    
T  12111201 atgaattttcttcactttgtattatcttaaaaaaccttataagaaccattga-cttcaatattcatatc 12111268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 17187414 - 17187346
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| || |||||||||| |||||||| | ||||||||||||| ||| ||||||||||||||||    
T  17187414 atgaattttctttactttgtattgtcttcaaataacttctaagaaccactgaacttcaatcttcatatc 17187346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 21077474 - 21077408
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcata 104  Q
    |||||||||||||| |||||||| ||||| |  |||||||||||||||||||| ||||||| |||||    
T  21077474 atgaattttattcaatttgtattgtcttcgattaccttctaagaaccattgatattcaatcctcata 21077408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 26159971 - 26159929
Alignment:
Q  64 ttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  26159971 ttcaaagaccttataagaaccattgatcttcaatcttcatatc 26159929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 34864169 - 34864236
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| |||| |||||||| ||| |||| ||||||||||||||||||| ||||||||| ||||||    
T  34864169 atgaattttcttcattttgtattgtctacaaaaaccttctaagaaccattga-cttcaatctccatatc 34864236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 19602046 - 19601972
Alignment:
Q  31 acatgacatgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| ||||||||| | |||||| |||| |||||||| ||||| |||||||||||| ||||||||| |||||||    
T  19602046 acatgaaatgaattttctccactttttattgtcttcaaaaaccttttaagaaccattg-tcttcaatcatcatatc 19601972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 23353859 - 23353794
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||||||||||| |||| |||||||||||   ||| ||||||||| ||||||||||||    
T  23353859 atgaattttcttcactttgtattgtcttaaaagaccttct---aactattgatctttaatcttcatatc 23353794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 1695720 - 1695764
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaa 82  Q
    ||||||||||||||||||||||| |||||||  ||||||||||||    
T  1695720 atgaattttattcactttgtattgtcttcaacaaccttctaagaa 1695764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 15192444 - 15192377
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| | ||||||||| ||| |||||||  |||||||||||||||||| |||||||| ||||||||    
T  15192444 atgaattgtcttcactttgaattgtcttcaacaaccttctaagaaccattggtcttcaat-ttcatatc 15192377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 46647420 - 46647368
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||||||| ||| ||||| ||||||||||||||||||| | ||||||||    
T  46647420 ttgtattatctttaaaaaccttttaagaaccattgatcttcatttttcatatc 46647368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 47024649 - 47024703
Alignment:
Q  48 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcat 103  Q
    ||||||||||| | | |||||| ||||||||||||||||||| |||||||||||||    
T  47024649 ttcactttgtactgttttcaaaaaccttctaagaaccattga-cttcaatcttcat 47024703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 13064657 - 13064607
Alignment:
Q  48 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 98  Q
    ||||||||| ||| |||||||| ||| ||||||||||||||| ||||||||    
T  13064657 ttcactttgaattgtcttcaaataccctctaagaaccattgaacttcaatc 13064607  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 22119835 - 22119794
Alignment:
Q  65 tcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||    
T  22119835 tcaaaaaccctctaagaaccattgatcttcaatattcatatc 22119794  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 29437677 - 29437644
Alignment:
Q  73 cttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||||||||||| ||||||||||||||||    
T  29437677 cttctaagaaccattgaacttcaatcttcatatc 29437644  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 27303018 - 27302951
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| |||||||| || | |||||||| |||||||||||||| || || |||||| ||||||||    
T  27303018 atgaattttcttcactttataatgtcttcaaaaaccttctaagaacccttaatgttcaat-ttcatatc 27302951  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 18818942 - 18818875
Alignment:
Q  39 tgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| | ||||||||    
T  18818942 tgaattttcttcactttgtattgtcttcaaagaccttctaagaaccattaatcttcagttttcatatc 18818875  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 14921912 - 14921980
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||| |||| ||||||||||||| ||| || | ||||||||||||||||||| ||||||||||||||||    
T  14921912 atgatttttcttcactttgtattgtctacatataccttctaagaaccattgaacttcaatcttcatatc 14921980  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 31262238 - 31262170
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||||| ||||  || |||| ||||||||||||| |||||||||||| ||||||||||||||||||    
T  31262238 atgaattttcttcaacttatattgtcttcaaagacctactaagaaccattaatcttcaatcttcatatc 31262170  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 31274197 - 31274131
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcata 104  Q
    ||||||||| ||||  || |||| |||||||||||||||||||||||||| ||||||||| ||||||    
T  31274197 atgaattttcttcaacttatattgtcttcaaagaccttctaagaaccattaatcttcaattttcata 31274131  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 1733332 - 1733275
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttca 95  Q
    |||||||||||||||||||||||||||||||  || ||||||||||  ||||||||||    
T  1733332 atgaattttattcactttgtattatcttcaacaacattctaagaactcttgatcttca 1733275  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 16593624 - 16593681
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttca 95  Q
    ||||||||| ||||||||||||| |||||||  |||||||||||||| ||||||||||    
T  16593624 atgaattttcttcactttgtattgtcttcaacaaccttctaagaacccttgatcttca 16593681  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 27417136 - 27417205
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatca 107  Q
    ||||||||| ||||||||||||| | |||||| ||||||| |||||||||| |||||||  |||||||||    
T  27417136 atgaattttcttcactttgtattgttttcaaaaaccttcttagaaccattggtcttcaacattcatatca 27417205  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 1732789 - 1732725
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatat 105  Q
    ||||||||||| ||||||||  ||||||| |  ||||||||| ||||||||||||||||||||||    
T  1732789 aattttattcattttgtattgccttcaaatatattctaagaatcattgatcttcaatcttcatat 1732725  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 17152379 - 17152327
Alignment:
Q  54 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||||||||||| ||||||||||||||||| || |||| ||||||||||    
T  17152379 ttgtattatcttcaaaaaccttctaagaaccattcatattcattcttcatatc 17152327  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 18236176 - 18236243
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatat 105  Q
    ||||||||| ||||  ||||||| |||||||  ||||||||||||||||||  |||||||||||||||    
T  18236176 atgaattttcttcatcttgtattgtcttcaacaaccttctaagaaccattggccttcaatcttcatat 18236243  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 30999012 - 30998953
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    ||||||||| | ||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  30999012 atgaattttctccactttgtattgtcttcaacaaccttctaagaacccttgatcttcaat 30998953  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 32619863 - 32619799
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||||||||||||||| |||||||| ||||||| |||||  ||||| |||| ||||||||||    
T  32619863 aattttattcactttgtattgtcttcaaaaaccttcttagaacttttgat-ttcattcttcatatc 32619799  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 22525696 - 22525744
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattga 89  Q
    |||||| |||||||||| || |||||||| |||||||||||||||||||    
T  22525696 aattttcttcactttgtgttgtcttcaaataccttctaagaaccattga 22525744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 24188210 - 24188144
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatat 105  Q
    |||||| || ||||||||||||| |||||||| || |||||||| | |||| ||||||||||||||||    
T  24188210 atgaatcttcttcactttgtattgtcttcaaaaactttctaagatctattg-tcttcaatcttcatat 24188144  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 25474278 - 25474219
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 97  Q
    ||||||||| |||||||| |||| |||||||  |||||||||||||| |||| |||||||    
T  25474278 atgaattttcttcactttatattgtcttcaacaaccttctaagaacccttgaccttcaat 25474219  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 17415037 - 17415101
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcat 103  Q
    ||||||||| |||||||| | || |||||||| | || ||||||||||||||| ||||||||||||    
T  17415037 atgaattttcttcactttttgttgtcttcaaataactcctaagaaccattgat-ttcaatcttcat 17415101  T

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Target: scaffold0171 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 21639 - 21570
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatca 107  Q
    |||||| || || |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||    
T  21639 atgaatattcttaactttgtattgtctttaaaaaccttctaagaaccattgatcttcaatcttcatatca 21570  T

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Target: scaffold0171; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 6431 - 6369
Alignment:
Q  43 ttttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||| ||||||||||||| |||||||| | |||||| ||||||||| |||||||| ||||||||    
T  6431 ttttcttcactttgtattttcttcaaaaatcttctaggaaccattggtcttcaat-ttcatatc 6369  T

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Target: scaffold0650 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 5644 - 5710
Alignment:
Q  39 tgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||    
T  5644 tgaattttcttcactttgtattttctttaaagaccttctaagaaccattga-attcaatcttcatatc 5710  T

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Target: scaffold0011 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 228060 - 228125
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcata 104  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||| ||||||    
T  228060 atgaattttcttcactttgtattgtcttcaaataccttctaagaaccattg-tcttcaatattcata 228125  T

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Target: scaffold0190 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 11571 - 11635
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttca 102  Q
    ||||||||| ||||||||||||| |||||||| ||||| |||||| ||||||| |||||||||||    
T  11571 atgaattttcttcactttgtattgtcttcaaataccttataagaatcattgatattcaatcttca 11635  T

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Target: scaffold0188 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 26830 - 26896
Alignment:
Q  40 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    ||||||| ||||||||||||| |||||||  || |||||||||||||||| ||||||| ||||||||    
T  26830 gaattttcttcactttgtattgtcttcaagaactttctaagaaccattgaacttcaattttcatatc 26896  T

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Target: scaffold0337 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 2046 - 1982
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| ||||||||||||| |||||| | | ||||||| |||||||| |||||||||||||||||    
T  2046 aattttcttcactttgtattttcttcataaaacttctaacaaccattg-tcttcaatcttcatatc 1982  T

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Target: scaffold0362 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 7860 - 7799
Alignment:
Q  38 atgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatct 99  Q
    ||||||||| || |||||||| | |||||||  ||||||||||||||||||  |||||||||    
T  7860 atgaattttcttgactttgtactgtcttcaacaaccttctaagaaccattggccttcaatct 7799  T

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Target: scaffold0065 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 12482 - 12418
Alignment:
Q  41 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatcttcatatc 106  Q
    |||||| ||||||||||||| |||||| | | ||||||| |||||||| ||||| |||||||||||    
T  12482 aattttcttcactttgtattttcttcataaaacttctaacaaccattg-tcttcgatcttcatatc 12418  T

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Target: scaffold0185 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 2748 - 2684
Alignment:
Q  31 acatgacatgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttca 95  Q
    |||||| |||| |||| |||||| |||||| ||||||||   ||| |||||||||||||||||||    
T  2748 acatgaaatgagttttcttcactctgtattgtcttcaaatgtcttataagaaccattgatcttca 2684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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