View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19179_low_19 (Length: 300)
Name: NF19179_low_19
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19179_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 1361725 - 1361557
Alignment:
| Q |
119 |
cttattgaaattgtaaaatgacatttggaacaaacatattttgctagaatgacttatatttttggacgaaaggactacaacataaatcactctccaataa |
218 |
Q |
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| T |
1361725 |
cttattgaaattgtaaaatgacatttggaacaaacatattttgctaaaatgacttatatttttggacgaaaggattacaacataaatcactctccaataa |
1361626 |
T |
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| Q |
219 |
atatattctattttatattatgc-tgctaatgataaatacacaaatatagagtgtatgaggtaatttgt |
286 |
Q |
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| T |
1361625 |
atatattctattttatattatgcatgctaatgataaatacacaaatatagagtgtatgaagtaatttgt |
1361557 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1361847 - 1361813
Alignment:
| Q |
1 |
agttattttacaaaaatattattcactgatgatat |
35 |
Q |
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| T |
1361847 |
agttattttacaaaaatattattcactaatgatat |
1361813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 22508074 - 22508022
Alignment:
| Q |
122 |
attgaaattgtaaaatgacat---ttggaacaaacatattttgctagaatgac |
171 |
Q |
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| T |
22508074 |
attgatattgtaaaatgacataatttgggacaaacatattttgctagaatgac |
22508022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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