View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19179_low_21 (Length: 280)
Name: NF19179_low_21
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19179_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 9186042 - 9185882
Alignment:
| Q |
17 |
aaaatcaactttacaagtgaacgatgaaattctttaaaattctttttacactagaaatcttttcggtatgagatttagaatatgacgacttctggtggca |
116 |
Q |
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| T |
9186042 |
aaaatcaacttgtaaagtgaacgatgaaattctttaaaattctttttacattagaaatcttttcggtatgagatttagaa-----------------gca |
9185960 |
T |
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| Q |
117 |
cttggatagaatttaagaaaggggcaaagtcaattttttatgtgtgctatactatgtgtttttagtccacaccaccat |
194 |
Q |
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| T |
9185959 |
cttggatagaatttaagaaaggggcaaagtcaattttttatgtgtgctatactatgtgtttttaatccacaccaccat |
9185882 |
T |
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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 9185645 - 9185591
Alignment:
| Q |
216 |
ggttagatgttattttatgtaagccagtatcaataatacttgcttgctgcctttg |
270 |
Q |
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| T |
9185645 |
ggttagatgttattttatgtaagccagtatcaatattacttgcttgctgcctttg |
9185591 |
T |
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