View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19179_low_23 (Length: 264)
Name: NF19179_low_23
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19179_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 34501946 - 34502180
Alignment:
| Q |
18 |
acaaggctctggcaacatgcataaagagcgtttgtttaagccattcttcccaggcgtccacctcagggatatcattcaacatctccaaagccagatgtac |
117 |
Q |
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| T |
34501946 |
acaaggctctggcaacatgcataaagagcgtttgtttaagccattcttcccaggcgtccacctcagggatatcattcaacatctccaaagccagatgtac |
34502045 |
T |
|
| Q |
118 |
cgtttcctttcttaaacaaagtattttgatcgtattcaatggtaataacatttttaacttcagcgaccagtttgggtttgttttgcgtttctcatttgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34502046 |
cgtttcctttcttaaacaaagtattttgatcgtattcaatggtaataacatttttaacttcagcgaccagtttgggtttgttttgcgtttctcatttgca |
34502145 |
T |
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| Q |
218 |
gccatatagagaacataggcttctttaatcatatt |
252 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
34502146 |
gccatatagagagcataggcttctttaatcatatt |
34502180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 78 - 252
Target Start/End: Complemental strand, 44460675 - 44460501
Alignment:
| Q |
78 |
cctcagggatatcattcaacatctccaaagccagatgtaccgtttcctttcttaaacaaagtattttgatcgtattcaatggtaataacatttttaactt |
177 |
Q |
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|||| ||||||||||||||||||| ||||||| |||||| ||||| ||| ||||||| || |||| |||| |||| | |||||| |||||| ||||||| |
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| T |
44460675 |
cctcggggatatcattcaacatcttgaaagccaaatgtacagtttctttttttaaacatagcatttggatcatattaagtggtaacaacattcttaactt |
44460576 |
T |
|
| Q |
178 |
cagcgaccagtttgggtttgttttgcgtttctcatttgcagccatatagagaacataggcttctttaatcatatt |
252 |
Q |
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| T |
44460575 |
cagcggccagtttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatt |
44460501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 78 - 252
Target Start/End: Complemental strand, 44468208 - 44468034
Alignment:
| Q |
78 |
cctcagggatatcattcaacatctccaaagccagatgtaccgtttcctttcttaaacaaagtattttgatcgtattcaatggtaataacatttttaactt |
177 |
Q |
| |
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|||| ||||||||||||||||||| ||||||| |||||| ||||| ||| ||||||| || |||| |||| |||| | |||||| |||||| ||||||| |
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| T |
44468208 |
cctcggggatatcattcaacatcttgaaagccaaatgtacagtttctttttttaaacatagcatttggatcatattaagtggtaacaacattcttaactt |
44468109 |
T |
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| Q |
178 |
cagcgaccagtttgggtttgttttgcgtttctcatttgcagccatatagagaacataggcttctttaatcatatt |
252 |
Q |
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| T |
44468108 |
cagcggccagtttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatt |
44468034 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 78 - 252
Target Start/End: Complemental strand, 46359545 - 46359371
Alignment:
| Q |
78 |
cctcagggatatcattcaacatctccaaagccagatgtaccgtttcctttcttaaacaaagtattttgatcgtattcaatggtaataacatttttaactt |
177 |
Q |
| |
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|||| ||||||||||||||||||| ||||||| |||||| ||||| ||| ||||||| || ||||||||| |||| | |||||| |||||| ||||||| |
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| T |
46359545 |
cctcggggatatcattcaacatcttgaaagccaaatgtacagtttctttttttaaacatagcattttgatcatattaagtggtaacaacattcttaactt |
46359446 |
T |
|
| Q |
178 |
cagcgaccagtttgggtttgttttgcgtttctcatttgcagccatatagagaacataggcttctttaatcatatt |
252 |
Q |
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||||| ||| ||||||||||||| |||| ||||||||||||||| | ||||| |||||||||||||||||||||| |
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| T |
46359445 |
cagcggccaatttgggtttgtttagcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatt |
46359371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 40180340 - 40180408
Alignment:
| Q |
184 |
ccagtttgggtttgttttgcgtttctcatttgcagccatatagagaacataggcttctttaatcatatt |
252 |
Q |
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||||||||||||| |||| |||||||||||||| ||| ||||||| |||||||||||||||||||||| |
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| T |
40180340 |
ccagtttgggtttcttttccgtttctcatttgctgcccgatagagagcataggcttctttaatcatatt |
40180408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 38604839 - 38604910
Alignment:
| Q |
181 |
cgaccagtttgggtttgttttgcgtttctcatttgcagccatatagagaacataggcttctttaatcatatt |
252 |
Q |
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|||||||||||| |||||||| |||||||| |||||||||| ||||| | |||| ||||||||||||||||| |
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| T |
38604839 |
cgaccagtttggatttgttttccgtttctcctttgcagccagatagatagcatatgcttctttaatcatatt |
38604910 |
T |
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