View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19179_low_25 (Length: 249)

Name: NF19179_low_25
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19179_low_25
NF19179_low_25
[»] chr5 (9 HSPs)
chr5 (66-231)||(36040197-36040362)
chr5 (11-63)||(12248276-12248328)
chr5 (11-63)||(43100335-43100387)
chr5 (14-63)||(13988250-13988299)
chr5 (14-63)||(36890380-36890429)
chr5 (11-63)||(33687650-33687702)
chr5 (14-60)||(20151390-20151436)
chr5 (14-63)||(11247195-11247244)
chr5 (19-63)||(15285332-15285376)
[»] chr8 (14 HSPs)
chr8 (11-63)||(11904856-11904908)
chr8 (11-63)||(12142084-12142136)
chr8 (11-63)||(35200559-35200611)
chr8 (16-63)||(28897998-28898045)
chr8 (14-63)||(1993770-1993819)
chr8 (14-63)||(14342319-14342368)
chr8 (12-61)||(41075725-41075774)
chr8 (14-63)||(43066034-43066083)
chr8 (14-58)||(8368501-8368545)
chr8 (16-63)||(2599534-2599581)
chr8 (14-63)||(4077091-4077140)
chr8 (12-61)||(31774729-31774778)
chr8 (20-63)||(45413674-45413717)
chr8 (12-61)||(16465740-16465789)
[»] chr7 (12 HSPs)
chr7 (11-63)||(28713680-28713732)
chr7 (11-63)||(38349586-38349638)
chr7 (12-63)||(42974506-42974557)
chr7 (14-63)||(46576372-46576421)
chr7 (11-59)||(33496506-33496554)
chr7 (11-63)||(37536442-37536494)
chr7 (12-63)||(48460662-48460713)
chr7 (11-60)||(13768379-13768428)
chr7 (11-59)||(11752604-11752652)
chr7 (16-60)||(31741049-31741093)
chr7 (16-60)||(38755027-38755071)
chr7 (16-60)||(47480144-47480188)
[»] chr6 (9 HSPs)
chr6 (14-63)||(16717993-16718042)
chr6 (11-60)||(12748217-12748266)
chr6 (11-63)||(34792778-34792830)
chr6 (14-63)||(14314116-14314165)
chr6 (14-63)||(9045836-9045885)
chr6 (14-66)||(1244686-1244738)
chr6 (14-63)||(9521947-9521996)
chr6 (12-60)||(29429590-29429638)
chr6 (14-58)||(14022942-14022985)
[»] chr1 (20 HSPs)
chr1 (11-60)||(29731194-29731243)
chr1 (12-63)||(26040973-26041024)
chr1 (14-63)||(1994956-1995005)
chr1 (14-63)||(27325758-27325807)
chr1 (14-63)||(44797596-44797645)
chr1 (11-63)||(47571690-47571742)
chr1 (16-63)||(39858350-39858397)
chr1 (13-63)||(40030841-40030891)
chr1 (14-63)||(1673372-1673421)
chr1 (11-60)||(48489455-48489504)
chr1 (14-62)||(29637340-29637388)
chr1 (16-63)||(527031-527078)
chr1 (12-63)||(7178239-7178290)
chr1 (12-59)||(19989246-19989293)
chr1 (13-63)||(15225120-15225170)
chr1 (14-63)||(2403055-2403104)
chr1 (16-63)||(46845788-46845835)
chr1 (14-63)||(6487731-6487780)
chr1 (20-61)||(49430600-49430641)
chr1 (19-63)||(13276599-13276643)
[»] chr4 (24 HSPs)
chr4 (11-63)||(48525329-48525381)
chr4 (12-63)||(51579323-51579374)
chr4 (14-63)||(17044006-17044055)
chr4 (14-63)||(25164601-25164650)
chr4 (14-63)||(37605821-37605870)
chr4 (14-63)||(43749095-43749144)
chr4 (14-63)||(55281211-55281260)
chr4 (17-63)||(20107113-20107159)
chr4 (17-63)||(39631271-39631317)
chr4 (14-63)||(3287087-3287136)
chr4 (14-63)||(5817510-5817559)
chr4 (14-63)||(45996024-45996073)
chr4 (16-63)||(22364593-22364640)
chr4 (13-60)||(26720030-26720077)
chr4 (14-63)||(32525152-32525201)
chr4 (12-63)||(24059261-24059312)
chr4 (16-63)||(32290217-32290264)
chr4 (15-62)||(36851231-36851278)
chr4 (16-63)||(51579584-51579630)
chr4 (28-58)||(44275714-44275744)
chr4 (14-63)||(25784038-25784087)
chr4 (12-61)||(41277220-41277269)
chr4 (19-63)||(9118622-9118666)
chr4 (16-60)||(42179269-42179313)
[»] chr3 (13 HSPs)
chr3 (11-63)||(36674646-36674698)
chr3 (14-64)||(38247800-38247850)
chr3 (14-63)||(12224133-12224182)
chr3 (14-63)||(23004759-23004808)
chr3 (12-61)||(48034937-48034986)
chr3 (14-63)||(50989206-50989255)
chr3 (14-63)||(51092338-51092387)
chr3 (15-63)||(29915090-29915138)
chr3 (15-63)||(29964243-29964291)
chr3 (14-63)||(9271113-9271162)
chr3 (12-60)||(8496712-8496760)
chr3 (14-62)||(33288136-33288184)
chr3 (20-63)||(8330728-8330771)
[»] chr2 (13 HSPs)
chr2 (14-63)||(13697095-13697144)
chr2 (14-63)||(14945866-14945915)
chr2 (14-63)||(32599378-32599427)
chr2 (14-63)||(36272791-36272840)
chr2 (11-63)||(40216412-40216464)
chr2 (12-63)||(17823582-17823633)
chr2 (22-63)||(23860302-23860343)
chr2 (15-63)||(37143091-37143139)
chr2 (12-63)||(40095266-40095317)
chr2 (12-63)||(42061359-42061410)
chr2 (14-63)||(14242645-14242694)
chr2 (19-63)||(3121613-3121657)
chr2 (19-63)||(33555498-33555542)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 66 - 231
Target Start/End: Original strand, 36040197 - 36040362
Alignment:
Q  66 tttaaataattttacacaagcttctaatcaaatatccatatttacaaatttgatatacaaattaaacatgctcaatataaaatattataagtgatatgag 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||    
T  36040197 tttaaataattttacacaagcttctaatcaaatatccatatttacaaatttgatgtacaaattaaacatgctcaatataaaatattatgagtgataggag 36040296  T
Q  166 atttttatcggtgctacgttgtcactgtttttgatatggatccatgcaatcgattgcatctacaca 231  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  36040297 atttttatcggtgctacgtcgttactgtttttgatatggatccatgcaatcgattgcatctacaca 36040362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 12248328 - 12248276
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  12248328 atatgtggatgtacaagtggtatatgccacctaaggtgatttatgtatcacta 12248276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 43100335 - 43100387
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  43100335 atatgtgggtgtacaagtggtatataccacctaagatggtttatgtatcacta 43100387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 13988299 - 13988250
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  13988299 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 13988250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 36890429 - 36890380
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  36890429 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 36890380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 33687702 - 33687650
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||| ||| |||||||||||||||||||||||||| || ||||||||||||||    
T  33687702 atatatggatgtacaagtggtatatgccacctaagatgatttatgtatcacta 33687650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 20151436 - 20151390
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 60  Q
    ||||||||| |||||||||||||| |||||| ||||| |||||||||    
T  20151436 tgtgggtgttcaagtggtatatgctacctaaagtggtctatgtatca 20151390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 11247244 - 11247195
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||| ||||||||| |||||||||| ||||||| || ||||||||||||    
T  11247244 tgtggatgtacaagtagtatatgccatctaaggtagtctatgtatcacta 11247195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 15285376 - 15285332
Alignment:
Q  19 gtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||| |||||||| |||||| |||||||||| ||||||||||||    
T  15285376 gtgtataagtggtacatgccatctaaggtggtctatgtatcacta 15285332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 11904908 - 11904856
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11904908 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 11904856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 12142136 - 12142084
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12142136 atatgtggatgtacaagtggtatatgccacctaaggtggtttatgtatcacta 12142084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 35200611 - 35200559
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  35200611 atatgtgggtgtacaagtaatatatgccacctaaggtggtttatgtatcacta 35200559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 28898045 - 28897998
Alignment:
Q  16 tgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  28898045 tgggtgtataagtggtatatgccacctaaggtggtctatgtatcacta 28897998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 1993770 - 1993819
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  1993770 tgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcacta 1993819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 14342319 - 14342368
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  14342319 tgtgggtgtataagtggtacatgccacctaaggtggtctatgtatcacta 14342368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 41075725 - 41075774
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcac 61  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  41075725 tatgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 41075774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 43066034 - 43066083
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
T  43066034 tgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcacta 43066083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 8368501 - 8368545
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtat 58  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||    
T  8368501 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtat 8368545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 2599581 - 2599534
Alignment:
Q  16 tgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  2599581 tgggtgtataagtggtacatgccacctaaggtggtctatgtatcacta 2599534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 4077091 - 4077140
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||| ||||||||||| ||||||||||||||||| ||| ||||||||    
T  4077091 tgtgggtatacaagtggtacatgccacctaaggtggtctatatatcacta 4077140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 31774778 - 31774729
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcac 61  Q
    |||||| |||||||||||||| ||| ||||||||||||| ||||||||||    
T  31774778 tatgtgagtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 31774729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 45413674 - 45413717
Alignment:
Q  20 tgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||| |||||||| ||||||||||||||||| ||||||||||||    
T  45413674 tgtataagtggtacatgccacctaaggtggtctatgtatcacta 45413717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 16465740 - 16465789
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcac 61  Q
    ||||||||| ||||||||||| |||||  |||||||||| ||||||||||    
T  16465740 tatgtgggtatacaagtggtacatgccgtctaaggtggtctatgtatcac 16465789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 28713732 - 28713680
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28713732 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 28713680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 38349586 - 38349638
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38349586 atatgtgggtgtacaagtggtatatgccacctaagatggtttatgtatcacta 38349638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 42974506 - 42974557
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  42974506 tatgtgggtgtataagtggtacatgccacctaaggtggtttatgtatcacta 42974557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 46576372 - 46576421
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  46576372 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 46576421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 33496554 - 33496506
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatc 59  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  33496554 atatgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatc 33496506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 37536442 - 37536494
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||| ||| ||||||||||||||| || ||||||||||||||    
T  37536442 atatgtgggtgtacatgtgatatatgccacctaagatgatttatgtatcacta 37536494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 48460713 - 48460662
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||    
T  48460713 tatgtggatgtacaaatggtacatgccacctaaggtggtctatgtatcacta 48460662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 13768428 - 13768379
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 60  Q
    |||||| ||||| ||||||||||||| || ||||||||||||||||||||    
T  13768428 atatgtaggtgtgcaagtggtatatgtcatctaaggtggtttatgtatca 13768379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 11752652 - 11752604
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatc 59  Q
    |||||| |||||||||||| || ||||||||||||||||| ||||||||    
T  11752652 atatgtaggtgtacaagtgatacatgccacctaaggtggtctatgtatc 11752604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 31741093 - 31741049
Alignment:
Q  16 tgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 60  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||    
T  31741093 tgggtgtataagtggtacatgccacctaaggtggtctatgtatca 31741049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 38755027 - 38755071
Alignment:
Q  16 tgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 60  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||    
T  38755027 tgggtgttcaagtggtacatgccacctaaggtggtctatgtatca 38755071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 47480144 - 47480188
Alignment:
Q  16 tgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 60  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||    
T  47480144 tgggtgtacaaatggtacatgccacctaaggtggtctatgtatca 47480188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 16718042 - 16717993
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16718042 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 16717993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 12748266 - 12748217
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 60  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12748266 atatgtgggtgtacaagtggtatatgccacctaaagtggtttatgtatca 12748217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 34792778 - 34792830
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  34792778 atatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 34792830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 14314116 - 14314165
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  14314116 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 14314165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 9045885 - 9045836
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  9045885 tgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcacta 9045836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 1244686 - 1244738
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcactaaat 66  Q
    ||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||    
T  1244686 tgtggatgtacaagtggtacatgccacttaaggtggtctatgtatcactaaat 1244738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 9521947 - 9521996
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||| ||||    
T  9521947 tgtgggtgtacaagtggtacatgccacctaaggtgatctatgtattacta 9521996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 29429638 - 29429590
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 60  Q
    ||||||||||||||||||||| |||||||||||||| || | |||||||    
T  29429638 tatgtgggtgtacaagtggtacatgccacctaaggtagtctgtgtatca 29429590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 14022985 - 14022942
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtat 58  Q
    |||||||||| ||| ||| ||||||||||||||||||||||||||    
T  14022985 tgtgggtgtaaaag-ggtgtatgccacctaaggtggtttatgtat 14022942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 29731243 - 29731194
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 60  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29731243 atatgtgggtgtactagtggtatatgccacctaaggtggtttatgtatca 29731194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 26041024 - 26040973
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  26041024 tatgtgggtgtacaagtggtacatgccacctaaggtggtttgtgtatcacta 26040973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 1995005 - 1994956
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  1995005 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 1994956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 27325758 - 27325807
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  27325758 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 27325807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 44797596 - 44797645
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  44797596 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 44797645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 47571690 - 47571742
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  47571690 atatgtgggtgtacaagtggcatatgtcacctaaggtggtttatatatcacta 47571742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 39858397 - 39858350
Alignment:
Q  16 tgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  39858397 tgggtgtataagtggtatatgccacctaaggtggtctatgtatcacta 39858350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 40030891 - 40030841
Alignment:
Q  13 atgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||||||| |||| |||||||||||| ||||||||||||    
T  40030891 atgtgggtgtacaagtggtacatgctacctaaggtggtctatgtatcacta 40030841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 1673421 - 1673372
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  1673421 tgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcacta 1673372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 48489504 - 48489455
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 60  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  48489504 atatatggatgtacaagtggtatatgccacctaaggtgatttatgtatca 48489455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 29637340 - 29637388
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcact 62  Q
    ||||||||||||||||||| |||||||||||| |||| |||||||||||    
T  29637340 tgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcact 29637388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 527031 - 527078
Alignment:
Q  16 tgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  527031 tgggtgtataagtggtacatgccacctaaggtggtctatgtatcacta 527078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 7178239 - 7178290
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||    
T  7178239 tatgtgggtgtacaaatggtacatgtcacctaaggtggtctatgtatcacta 7178290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 19989293 - 19989246
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatc 59  Q
    ||||||| ||||||||||||||||| || |||||||||||||||||||    
T  19989293 tatgtggatgtacaagtggtatatgtcatctaaggtggtttatgtatc 19989246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 15225120 - 15225170
Alignment:
Q  13 atgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||| |||| ||| ||||||||||||||||| ||||||||||||    
T  15225120 atgtgggtgtataagttgtacatgccacctaaggtggtctatgtatcacta 15225170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 2403055 - 2403104
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| |||||| ||||| |||| ||||||||||||    
T  2403055 tgtgggtgtacaagtggtacatgccatctaagatggtctatgtatcacta 2403104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 46845788 - 46845835
Alignment:
Q  16 tgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||| |||||||| |||||| |||||||||| ||||||||||||    
T  46845788 tgggtgtataagtggtacatgccatctaaggtggtctatgtatcacta 46845835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 6487780 - 6487731
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||| ||||||||||||| |||||||||||  |||| ||||||||||||    
T  6487780 tgtggatgtacaagtggtacatgccacctaaattggtctatgtatcacta 6487731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 49430600 - 49430641
Alignment:
Q  20 tgtacaagtggtatatgccacctaaggtggtttatgtatcac 61  Q
    |||| |||||||| ||||||||||||||||| ||||||||||    
T  49430600 tgtataagtggtacatgccacctaaggtggtctatgtatcac 49430641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 13276599 - 13276643
Alignment:
Q  19 gtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||| |||||||| || |||||||||||||| ||||||||||||    
T  13276599 gtgtataagtggtacataccacctaaggtggtctatgtatcacta 13276643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 48525381 - 48525329
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  48525381 atatgtggatgtacaagtggtatatgccacctaaagtggtttatgtatcacta 48525329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 51579374 - 51579323
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  51579374 tatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 51579323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 17044055 - 17044006
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  17044055 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 17044006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 25164601 - 25164650
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  25164601 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 25164650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 37605821 - 37605870
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  37605821 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 37605870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 43749144 - 43749095
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  43749144 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 43749095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 55281260 - 55281211
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  55281260 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 55281211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 20107159 - 20107113
Alignment:
Q  17 gggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  20107159 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 20107113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 39631271 - 39631317
Alignment:
Q  17 gggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  39631271 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 39631317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 3287136 - 3287087
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| || ||| |||||||||||||||||||||||    
T  3287136 tgtgggtgtacaagtggtacataccatctaaggtggtttatgtatcacta 3287087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 5817510 - 5817559
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  5817510 tgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcacta 5817559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 45996024 - 45996073
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  45996024 tgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcacta 45996073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 22364593 - 22364640
Alignment:
Q  16 tgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||| ||||||||||||||||||||| || ||||||||||||||    
T  22364593 tgggtgtataagtggtatatgccacctaagttgatttatgtatcacta 22364640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 26720030 - 26720077
Alignment:
Q  13 atgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 60  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||||    
T  26720030 atgtgggtgtagaagtggtacacgccacctaaggtggtttatgtatca 26720077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 32525152 - 32525201
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||| |||| ||||||||||||||||||||| |||| ||||||||||||    
T  32525152 tgtggatgtataagtggtatatgccacctaagatggtctatgtatcacta 32525201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 24059261 - 24059312
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||| || || |||||| |||||||||| ||||||||||||    
T  24059261 tatgtgggtgtacaaatgatacatgccatctaaggtggtctatgtatcacta 24059312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 32290264 - 32290217
Alignment:
Q  16 tgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||| |||||||| |||||||||||| |||| ||||||||||||    
T  32290264 tgggtgtataagtggtacatgccacctaagatggtctatgtatcacta 32290217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 36851278 - 36851231
Alignment:
Q  15 gtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcact 62  Q
    |||||||||||||||||| ||||||| ||||||||| |||| ||||||    
T  36851278 gtgggtgtacaagtggtacatgccacttaaggtggtctatgcatcact 36851231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 51579630 - 51579584
Alignment:
Q  16 tgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  51579630 tgggtgtacaagtggtacatgccacctaaggtggtct-tgtatcacta 51579584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 44275744 - 44275714
Alignment:
Q  28 tggtatatgccacctaaggtggtttatgtat 58  Q
    |||||||||||||||||||||||||||||||    
T  44275744 tggtatatgccacctaaggtggtttatgtat 44275714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 25784038 - 25784087
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||| ||||||||||||| |||||||||||| || | ||||||||||||    
T  25784038 tgtggatgtacaagtggtacatgccacctaagatgatctatgtatcacta 25784087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 41277269 - 41277220
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcac 61  Q
    |||||||||||||| |||||| ||| ||||||||||| | ||||||||||    
T  41277269 tatgtgggtgtacaggtggtacatgtcacctaaggtgatctatgtatcac 41277220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 9118622 - 9118666
Alignment:
Q  19 gtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||| ||  ||||||||||| ||||||||||||||||||    
T  9118622 gtgtacaagttgtgcatgccacctaaagtggtttatgtatcacta 9118666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 42179269 - 42179313
Alignment:
Q  16 tgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 60  Q
    |||||||| |||||||| || |||||||||||||| |||||||||    
T  42179269 tgggtgtataagtggtacataccacctaaggtggtctatgtatca 42179313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 36674646 - 36674698
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  36674646 atatgtgagtgtacaagtggtatatgtcacctaaggtggtttatgtatcacta 36674698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 38247850 - 38247800
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcactaa 64  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  38247850 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactaa 38247800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 12224133 - 12224182
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  12224133 tgtgggtgtacaaatggtacatgccacctaaggtggtttatgtatcacta 12224182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 23004808 - 23004759
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  23004808 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 23004759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 48034937 - 48034986
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcac 61  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  48034937 tatgtgggtgtacaagtggtacatgtcacctaaggtggtttatgtatcac 48034986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 50989255 - 50989206
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  50989255 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 50989206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 51092387 - 51092338
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  51092387 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 51092338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 29915090 - 29915138
Alignment:
Q  15 gtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  29915090 gtgggtgtacaagtggtatatgccacataaggtggtctatgtatcacta 29915138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 29964243 - 29964291
Alignment:
Q  15 gtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  29964243 gtgggtgtacaagtggtatatgccacataaggtggtctatgtatcacta 29964291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 9271162 - 9271113
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| |||||| |||||||||| ||||||||||||    
T  9271162 tgtgggtgtacaagtggtacatgccatctaaggtggtctatgtatcacta 9271113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 8496760 - 8496712
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 60  Q
    |||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  8496760 tatgtgggtggacaagtggtacatgccacctaaggtggtctatgtatca 8496712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 33288184 - 33288136
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcact 62  Q
    ||||||||||||||||||| || |||||||||||||| |||||||||||    
T  33288184 tgtgggtgtacaagtggtacataccacctaaggtggtctatgtatcact 33288136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 8330728 - 8330771
Alignment:
Q  20 tgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||    
T  8330728 tgtacaagtggtacatgccatctaaggtggtctatgtatcacta 8330771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 13697095 - 13697144
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  13697095 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 13697144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 14945866 - 14945915
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  14945866 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 14945915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 32599378 - 32599427
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
T  32599378 tgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcacta 32599427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 36272791 - 36272840
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  36272791 tgtgggtgtataagtggtacatgccacctaaggtggtctatgtatcacta 36272840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 40216464 - 40216412
Alignment:
Q  11 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||||||||||||  || |||||||||||||| ||||||||    
T  40216464 atatgtgggtgtacaagtggtatatatcatctaaggtggtttatatatcacta 40216412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 17823633 - 17823582
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||||||| || || ||| |||||||||||||||||||||||    
T  17823633 tatgtgggtgtacaagtgatacataccatctaaggtggtttatgtatcacta 17823582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 23860302 - 23860343
Alignment:
Q  22 tacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  23860302 tacaagtggtacatgccacctaaggtggtctatgtatcacta 23860343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 37143139 - 37143091
Alignment:
Q  15 gtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||| ||||| |||||| || |||||||||||||||||||||||    
T  37143139 gtgggtgtagaagtgatatatgtcatctaaggtggtttatgtatcacta 37143091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 40095317 - 40095266
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||| ||||||||||||| ||| || |||||||||| ||||||||||||    
T  40095317 tatgtggatgtacaagtggtacatgtcatctaaggtggtctatgtatcacta 40095266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 42061359 - 42061410
Alignment:
Q  12 tatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||||||||||||||||||| |||||||| || ||| | ||||||||||||    
T  42061359 tatgtgggtgtacaagtggtacatgccacccaaagtgctctatgtatcacta 42061410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 14242645 - 14242694
Alignment:
Q  14 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||| |||||| || ||||||||| |||| ||||||||||||    
T  14242645 tgtgggtgtacaggtggtacataccacctaagatggtctatgtatcacta 14242694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 3121657 - 3121613
Alignment:
Q  19 gtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    ||||| |||||||| |||||| |||||||||| ||||||||||||    
T  3121657 gtgtataagtggtacatgccatctaaggtggtctatgtatcacta 3121613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 33555498 - 33555542
Alignment:
Q  19 gtgtacaagtggtatatgccacctaaggtggtttatgtatcacta 63  Q
    |||||||||||||| ||||||| ||||||| | ||||||||||||    
T  33555498 gtgtacaagtggtacatgccacttaaggtgatctatgtatcacta 33555542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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