View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19179_low_27 (Length: 236)
Name: NF19179_low_27
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19179_low_27 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 17328278 - 17328168
Alignment:
| Q |
126 |
tgggagtgattaaatcagccataggagatgcaattctaacatcaatatttgttttcttcatctcaacattaagaattctctctacaaaaacatctctatt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17328278 |
tgggagtgattaaatcagccataggagatgcaattctaacatcaatatttgttttcttcatctcaacattaagaattctctctacaaaaacatctctttt |
17328179 |
T |
|
| Q |
226 |
tctcaaccttc |
236 |
Q |
| |
|
||||||||||| |
|
|
| T |
17328178 |
tctcaaccttc |
17328168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 17328391 - 17328339
Alignment:
| Q |
15 |
acatccaaaataagtgagtgagagtgtttcatcttccaagttccaataccaat |
67 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17328391 |
acatccaaaatatgtgagtgagagtgtttcatcttccaagttccaataccaat |
17328339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University