View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19179_low_28 (Length: 227)

Name: NF19179_low_28
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19179_low_28
NF19179_low_28
[»] chr6 (4 HSPs)
chr6 (1-227)||(33638544-33638767)
chr6 (145-206)||(26512859-26512920)
chr6 (145-206)||(26517975-26518036)
chr6 (145-201)||(12972471-12972527)
[»] chr3 (2 HSPs)
chr3 (147-207)||(21829213-21829273)
chr3 (150-206)||(25188735-25188791)
[»] chr5 (1 HSPs)
chr5 (145-216)||(24846233-24846304)
[»] chr1 (2 HSPs)
chr1 (145-207)||(26102029-26102091)
chr1 (145-189)||(27461280-27461324)
[»] chr7 (3 HSPs)
chr7 (25-105)||(7494556-7494636)
chr7 (25-104)||(16536764-16536844)
chr7 (25-104)||(16628818-16628898)
[»] chr2 (1 HSPs)
chr2 (21-105)||(17415360-17415444)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33638767 - 33638544
Alignment:
Q  1 ggtaaaattacattatttagaaaggtatgttccaatttttatattcatgtaaattttgactttttgttcttttgttgattgaggacaagcaataattaaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||| || |||||||||||||||||||||||    
T  33638767 ggtaaaattacattatttagaaaggtatgttccaatttctatattcatgtaaattttgactttttgt--ttttttttattgaggacaagcaataattaaa 33638670  T
Q  101 gtttgatgatggaacattataagatattttaggctannnnnnnnagttattttatttgcttttgaatacaattaagaggccatttagaggatttgtcaat 200  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33638669 gtttgatgatggaacattataagatattttaggcta-tttttttagttattttatttgcttttgaatacaattaagaggccatttagaggatttgtcaat 33638571  T
Q  201 ggtttgaaaaatatttagtatgttttc 227  Q
    |||||||||||||||||||||||||||    
T  33638570 ggtttgaaaaatatttagtatgttttc 33638544  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 26512920 - 26512859
Alignment:
Q  145 agttattttatttgcttttgaatacaattaagaggccatttagaggatttgtcaatggtttg 206  Q
    ||||||||| ||||| ||||||  ||| ||||||| ||||||||||| ||||||||||||||    
T  26512920 agttattttgtttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttg 26512859  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 26518036 - 26517975
Alignment:
Q  145 agttattttatttgcttttgaatacaattaagaggccatttagaggatttgtcaatggtttg 206  Q
    ||||||||| ||||| ||||||  ||| ||||||| ||||||||||| ||||||||||||||    
T  26518036 agttattttgtttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttg 26517975  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 12972527 - 12972471
Alignment:
Q  145 agttattttatttgcttttgaatacaattaagaggccatttagaggatttgtcaatg 201  Q
    ||||||||| ||||| ||||||  ||| ||||||| ||||||||||| |||||||||    
T  12972527 agttattttctttgcatttgaaggcaactaagaggtcatttagaggagttgtcaatg 12972471  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 21829273 - 21829213
Alignment:
Q  147 ttattttatttgcttttgaatacaattaagaggccatttagaggatttgtcaatggtttga 207  Q
    ||||||||||||| ||||||   || ||||||| ||||||||||| |||||||||||||||    
T  21829273 ttattttatttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtttga 21829213  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 25188735 - 25188791
Alignment:
Q  150 ttttatttgcttttgaatacaattaagaggccatttagaggatttgtcaatggtttg 206  Q
    |||| ||||| |||||| |||| ||||||| ||||||||||| ||| ||||||||||    
T  25188735 ttttctttgcatttgaagacaaataagaggtcatttagaggaattgacaatggtttg 25188791  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 24846233 - 24846304
Alignment:
Q  145 agttattttatttgcttttgaatacaattaagaggccatttagaggatttgtcaatggtttgaaaaatattt 216  Q
    ||||| ||| ||||| |||||| |||| ||||||| |||||||||||||| || |||||||||  |||||||    
T  24846233 agttactttctttgcatttgaagacaaataagaggtcatttagaggatttttccatggtttgaggaatattt 24846304  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 26102029 - 26102091
Alignment:
Q  145 agttattttatttgcttttgaatacaattaagaggccatttagaggatttgtcaatggtttga 207  Q
    ||||||||| ||||| ||||||  ||| ||||||| ||||||||| |||| ||||||||||||    
T  26102029 agttattttctttgcatttgaacgcaaataagaggtcatttagagaatttatcaatggtttga 26102091  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 27461324 - 27461280
Alignment:
Q  145 agttattttatttgcttttgaatacaattaagaggccatttagag 189  Q
    ||||||||||||||  ||||||||||| ||||||| |||||||||    
T  27461324 agttattttatttgtatttgaatacaaataagaggtcatttagag 27461280  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 7494556 - 7494636
Alignment:
Q  25 gtatgttccaatttttatattcatgtaaattttgactttttgttcttttgttgattgaggacaagcaataattaaagtttg 105  Q
    ||||||| || | |||| ||||||||||||| |||||| ||| | || ||||| |||||||||||||| | || |||||||    
T  7494556 gtatgtttcattctttaaattcatgtaaattctgacttcttgctattgtgttgcttgaggacaagcaacagtttaagtttg 7494636  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 16536844 - 16536764
Alignment:
Q  25 gtatgttccaattt-ttatattcatgtaaattttgactttttgttcttttgttgattgaggacaagcaataattaaagttt 104  Q
    ||||||||||| || ||| ||||||||||||| | |||| || || |||||||| |||||||||| ||| |||| ||||||    
T  16536844 gtatgttccaaattcttaaattcatgtaaattataacttctttttattttgttgcttgaggacaaacaacaatttaagttt 16536764  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 16628818 - 16628898
Alignment:
Q  25 gtatgttccaattt-ttatattcatgtaaattttgactttttgttcttttgttgattgaggacaagcaataattaaagttt 104  Q
    ||||||||||| || ||| ||||||||||||| | |||| || || |||||||| |||||||||| ||| |||| ||||||    
T  16628818 gtatgttccaaattcttaaattcatgtaaattataacttctttttattttgttgcttgaggacaaacaacaatttaagttt 16628898  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 17415444 - 17415360
Alignment:
Q  21 aaaggtatgttccaatttttatattcatgtaaattttgactttttgttcttttgttgattgaggacaagcaataattaaagtttg 105  Q
    ||||||||| ||||||||||| ||||||||||||| | |||| | | | |||| ||| ||||| ||||||||  ||| |||||||    
T  17415444 aaaggtatgctccaatttttaaattcatgtaaattataacttctagctattttattgcttgagaacaagcaacgatttaagtttg 17415360  T

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