View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19179_low_5 (Length: 451)
Name: NF19179_low_5
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19179_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 436
Target Start/End: Original strand, 33715586 - 33716021
Alignment:
| Q |
13 |
gaacctgtggcgttgtgataaattcgcgttacggtttgtcgctagtagtagcatttccgataaattaattctcacaatcnnnnnnnnnnnnn-------g |
105 |
Q |
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| T |
33715586 |
gaacctgcggcgttgtgataaatttgcgttacggtttgttgttagtagtagcatttccgttaaattaattctcactatcttttttttttttttttttttg |
33715685 |
T |
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| Q |
106 |
aaataaagggacacatccgacata----ataatcatacacataactttaaggttcaaaatcaaacttgaatgaacgtgttcaacctaataatatctcaat |
201 |
Q |
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| T |
33715686 |
agataaagagacacatccgatatatataagaatcatacacataactgtaaggtccaaaatcaaacttgaatgaacgtgttcaacctaataatatctcaat |
33715785 |
T |
|
| Q |
202 |
gtaatttaaagaattgactgcatttag-gctccaatgtatcccatgaactaaatcatttggactagctatgaaatcaaggggtcgtttgttcgggaattt |
300 |
Q |
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| T |
33715786 |
ataatttaaagaattgattgcatttagcgctccaatgtatcccatgaactaaatcatttggactagctatgaaatcaaggggtcgtttgttcgggaattt |
33715885 |
T |
|
| Q |
301 |
ctttgagnnnnnnntctatatttcaaaccaaaaaatcacttttagcattttaataatatttgttttagattaaaaaggttgtttagaaaatctttcttaa |
400 |
Q |
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| T |
33715886 |
ttttgagaaaaaaatctacatttcaaaccaaaaaatcacttttatcattttaataatatttgttttagattaaaaaggttgtttagaaaatctttcttaa |
33715985 |
T |
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| Q |
401 |
ccttgaagtataactaattaactacaccttcccttt |
436 |
Q |
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| T |
33715986 |
ccttgaagtataactaattaactacacctgcccttt |
33716021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 108 - 436
Target Start/End: Original strand, 33703369 - 33703702
Alignment:
| Q |
108 |
ataaagggacacatccgacata----ataatcatacacataactttaaggttcaaaatcaaacttgaatgaacgtgttcaacctaataatatctcaatgt |
203 |
Q |
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|||||||||||||||||| ||| | |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33703369 |
ataaagggacacatccgatatatataagaatcatacacataactgtaaggtccaaaatcaaacttgaatgaacgtgttcaacctaataatatctcaatgt |
33703468 |
T |
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| Q |
204 |
aatttaaagaattgactgcatttag-gctccaatgtatcccatgaactaaatcatttggactagctatgaaatcaaggggtcgtttgttcgggaatttct |
302 |
Q |
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| T |
33703469 |
aatttaaagaattgactgcatttagcgctccaatgtatcccatgaactaaatcatttggactagctatgaaatcaaggggtcgtttgtttgggaattttt |
33703568 |
T |
|
| Q |
303 |
ttgagnnnnnnntctatatttcaaaccaaaaaatcacttttagcattttaataatatttgttttagattaaaaaggttgtttagaaaatctttcttaacc |
402 |
Q |
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| T |
33703569 |
ttgagaaaaaaatctacatttcaaaccaaaaaatcacttttatcattttaataatatttgttttagattaaaaaggttgtttagaaaatctttcttaacc |
33703668 |
T |
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| Q |
403 |
ttgaagtataactaattaactacaccttcccttt |
436 |
Q |
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| T |
33703669 |
ttgaagtataactaattaactacacctgcccttt |
33703702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 33703312 - 33703344
Alignment:
| Q |
55 |
tagtagtagcatttccgataaattaattctcac |
87 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
33703312 |
tagtagtagcatttccgttaaattaattctcac |
33703344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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