View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19179_low_8 (Length: 423)
Name: NF19179_low_8
Description: NF19179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19179_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 40572673 - 40573058
Alignment:
| Q |
18 |
aatgggatggtgaaagaaagagaaacgatataagggtaagggatttgggttcatgggtggtcgacaaattcacg-aaattaaatttttggtatccttttg |
116 |
Q |
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| T |
40572673 |
aatgggatggtgaaagaaagagaaacgatataagggtaagggatttgggttcatgggtggtcgacaaattcacgcaaattaaatttttggtatccttttg |
40572772 |
T |
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| Q |
117 |
gttgactattataaggttaaacggtcgatttggaagagcacaaatctttcgatggatggtcatttgatgcttcaaaagtatgtcatgttctctctcatag |
216 |
Q |
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| T |
40572773 |
gttgactattataaggttaaactgtccatttggaagagcagaaatctttcgatggatggtcgtttgatgcttcaaaaatatgtcatgtcctctctcatag |
40572872 |
T |
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| Q |
217 |
tctattttatttccttcttctattatttcttcggtctaatatatttttaatttctcaatgtggcgaaaaactgaggattttgaaaaaataacttggaaca |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| || |
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| T |
40572873 |
tctattttatttccttcttctattatttcttcagtctaatatatttttaacttctcaatgtggcgaaaaagtgaggatttttaaaaaataacttggatca |
40572972 |
T |
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| Q |
317 |
aacaggatattgtttgcttgaataaggagtttggaggtttggggataaggataataaaagaatttaatgtggctcctctaggtaaa |
402 |
Q |
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| T |
40572973 |
aacgggacattgtttgcttgaataagtagtttggaggttttgggataaggataattaaagaatttaatgtggctcttctaggtaaa |
40573058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 17858180 - 17858228
Alignment:
| Q |
335 |
tgaataaggagtttggaggtttggggataaggataataaaagaatttaa |
383 |
Q |
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| T |
17858180 |
tgaataaggaggttggtggtttgggggttaggagaataaaagaatttaa |
17858228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 32534129 - 32534086
Alignment:
| Q |
341 |
aggagtttggaggtttggggataaggataataaaagaatttaat |
384 |
Q |
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| T |
32534129 |
aggaggttggaggtttgggggtaaggagaataaaagaatttaat |
32534086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 7447476 - 7447428
Alignment:
| Q |
335 |
tgaataaggagtttggaggtttggggataaggataataaaagaatttaa |
383 |
Q |
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||||||||||| |||| ||||||||| | |||| ||||||||||||||| |
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| T |
7447476 |
tgaataaggaggttggtggtttgggggttaggagaataaaagaatttaa |
7447428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 3654347 - 3654287
Alignment:
| Q |
288 |
tgaggattttgaaaaaataacttggaacaaacaggatattgtttgcttgaataaggagttt |
348 |
Q |
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| T |
3654347 |
tgaggatttcaaaaaaataacttggatcaaatgggacactatttgcttgaataaggagttt |
3654287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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