View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1917_high_11 (Length: 235)
Name: NF1917_high_11
Description: NF1917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1917_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 55695879 - 55695678
Alignment:
| Q |
19 |
agatattatcattcttgcttttgtcctttcctttcagaagagaaaaacaaaattcaagccaactttttaaatcaaaattgcattatttttgtcatcagtt |
118 |
Q |
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| T |
55695879 |
agatattatcattcttgcttttgtcctttcctttcagaagagaaaaacaaaattcaagccaactttttaaatcaaaattgcattatttttgtcattagtt |
55695780 |
T |
|
| Q |
119 |
gcagttttttaaggctctttaacttgccgtttgataatgtggttttatttcataaaacccctttccaaaaacatgttttctaattatcttgtggtgcact |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
55695779 |
gcagttttttaaggctctttaacttgccgtttgataatgtggttttatttcataaaatccctttccaaaaacatgttttctaattatcttgtggtgcact |
55695680 |
T |
|
| Q |
219 |
ct |
220 |
Q |
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|| |
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| T |
55695679 |
ct |
55695678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 35803815 - 35804020
Alignment:
| Q |
24 |
ttatcattcttgcttttgtcctttcctttcagaagagaaaaacaaaattcaagccaactttttaaatcaaaattgcattatttttg------------tc |
111 |
Q |
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|||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
35803815 |
ttatcatt-ttgtttttgtcccttcctttcagaagagaaaaacaaaattcaagccaactttttaattcaaaattgcattatttttgttgtcatttttttt |
35803913 |
T |
|
| Q |
112 |
atcagttgcagttttttaaggctctttaacttgccgtttgataatgtggttttatttcataaaacccctttccaaaaacatgttttctaattatcttgtg |
211 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||| |||||||||||| ||||||| |
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| T |
35803914 |
atcagttgca-atttttaaggctctttaacttgccttttgataatgtggttttatttcttaaaatccctttacaaaagtttgttttctaattttcttgtg |
35804012 |
T |
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| Q |
212 |
gtgcactc |
219 |
Q |
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|||||||| |
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| T |
35804013 |
gtgcactc |
35804020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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