View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1917_high_4 (Length: 352)
Name: NF1917_high_4
Description: NF1917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1917_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 4798363 - 4798531
Alignment:
| Q |
19 |
ttgctctccattttgatttttagtaaactgagcttcattcttaaaagtcaatttaacttggtaactactcatcaaagacattttcaccacttaattttca |
118 |
Q |
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| T |
4798363 |
ttgctctccattttgatttttagtaaactgagcttcattcttaaaagtcaatttaacttggtaactactcatcaaagacattttcaccacttaattttca |
4798462 |
T |
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| Q |
119 |
gcaacaaagtaaagatacattctgacaacctctttctttaagaataagccggagagatacatatccacg |
187 |
Q |
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| T |
4798463 |
gcaacaaagtaaagatacattctgacaacctctttctttaagtataagccggagagatacatatccacg |
4798531 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 4798574 - 4798658
Alignment:
| Q |
239 |
gattgattgcacgtgttttttcatatccacgtattcccttcaattannnnnnnaaatgattttgtaacatccataatggtcatat |
323 |
Q |
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| T |
4798574 |
gattgattgcacgtgttttttcatatccacgtattcccttcaattatttttttaaatgattttgtaacatccataatggtcatat |
4798658 |
T |
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